RNA id: TU34460


Basic Information

Item Value
RNA id TU34460
length 1914
RNA type TUCP
GC content 0.51
exon number 3
gene id G27551
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38432045 ~ 38436595 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGATGCCTTCCTCCACTTCACTTTCAAATATCTTcttgggtttctttttcttcttcttctggttGAAAAAGTTCAAGTCGTCCAGATCATCTGATGCTTCTTTTCTCCTGCCCTCGTCCTCGTCCAGGTCCAGCTCGCGGTCCTCCCCCACCTCGGGCTCGGCCTCCCTGGTCTCGGGGGGCTGGGTGTCCTCACTGGGCGCTTcacctccctcctcctccaacATGAAgggcttcttcttcttcttcttcttctttgtcatGTTGGGGTCGAAgatcatctgcagagagagcGACAATTACAACCGTggacccccgcccccccaatctgtttgtttaaagcagttttgttcccagccctggtcctagacgaccccctaccctgctggttttcgttccaaccaagttctcaattacttaattgaacccttactGAACTCTTCATTTCCTAAATcaatcttaattattttaaacagtaggagTTTTAAGTTACGTACAGCATTGTATGAAGACCTTATTAATGAACCAGCTCATATTACACCATATAAAGTCAactctaagcagattgttacttcaattaaggttcaattaagtaattaagagttcAGATGGAAGAacaaacagcagggtagggggcctccagggccaggattgggaacccctagtttaaataataatactgcatcATTCCCCATTACCTTTCTACGCAAACATAAACAGGGACCACAATCTAAACCTTATACTGCGTTTTGTCCCACTGCACATCTCATTAGACATAAAGACAGTATGTTGTCCTCTACTATACCTGCTGGTCGCTGTTGGAGGGTGGTTTGGAGCCCTGCtggagggggggggttaaaCTAAATtccttgttaaaaaaagaaaagaagcaatACAAGGATCAAAGATCAGGCGTTGTGTGGGGCGGATTTCCTACACTGGGGTGGTCAGGGACAGGGATGACGGGCCAATGGAGAGCATGGGGACGTCTTTGTCACAGTCAGAGACAGGACGGGACACCGCATGAGACGGATCCGGTTCTGCCTCAGGCCCAGTGGACTGGACCGCTCGTCAGGGTGTCAGAAACTCGTCCTGAAGGCAAGGCCTGTTACAAACTATCTCCCCTCGGAGCACACGGTTAGAAAGGCCTTCAGCCCAGCCGCGGCCGCCATGCAGTCATTCATTCCGTCTCGCACTCTGCGCCCCGCGGGTGTCCAAGCACGCCGCTCTGCCGGGGCTGCCCGTTGCACCGGGGGCTGCAGCCCGTGTGCGGCAGCATGGACGGCGCTCACATGGGGACCCGGGAGAGAGCGCCGCCAGCCCGAGTAGGCCCGACCCGCGCCGCCTGCACACTGGCCTTCTTCACAGGCCGACATGCACGGCAGGGCAACCGGCATGATGTACCGAAACAGCGGCCGACTCACCTCGTCTCCCGACATGTCTGGTTTCCGTGTCTCGCtgtttttgctttgctgttATTTGTGAAATTCAATCGCTCAGCGCCTCTCCTCACTGCTCCCCCTTCACTGCGACTAGTTTCTTGCATCAGCTTTCGCCCACTGCGCAGGTGCGGGCTTCCCGTTTCCCAACGCGCGTACGTCACAGCCTGACCAAAGCCTGCCGGGATCTGTAGTTTTcgaaacaaaaaagtttccagaTGTTTTCAATTTCAACTTCCTATGGGGTTTTGCCTTTCACAGTGCAGTCTGTGGACCAAGGAGTGCTGTGCTCAAAACCACTGACATATGAAGAGTGAGATGATATTGTGCAGAAGACTGTGTGCGTCAGAAAGCATCTGTATTCTGCCAGCGGAATGTACTGTGCACTTCTGGGATCGGAGCCTCACAAAAATGTAGCAAGAAGTTGATTAAGGAAGAAACTGTAGATGTACACTCAgcatttttcaatacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34393 lncRNA upstream 404122 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 414901 38016868 ~ 38017144 (+) True G27489
TU34351 lncRNA upstream 654583 37777065 ~ 37777462 (+) True G27462
TU34287 lncRNA upstream 932660 37495159 ~ 37499385 (+) True G27400
TU34216 lncRNA upstream 1226089 37203870 ~ 37205956 (+) False AMCG00007923
TU34464 lncRNA downstream 2979 38439574 ~ 38439892 (+) True G27552
TU34465 lncRNA downstream 4941 38441536 ~ 38442071 (+) True G27553
TU34473 lncRNA downstream 44702 38481297 ~ 38482391 (+) True G27561
TU34503 lncRNA downstream 235276 38671871 ~ 38729032 (+) True G27581
TU34587 lncRNA downstream 355854 38792449 ~ 38834594 (+) True G27648
AMCG00007957 mRNA upstream 8890 38412510 ~ 38423155 (+) True AMCG00007957
AMCG00007952 mRNA upstream 261899 38168621 ~ 38170146 (+) True AMCG00007952
AMCG00007948 mRNA upstream 345294 38080756 ~ 38086751 (+) True AMCG00007948
AMCG00007951 mRNA upstream 361202 38067388 ~ 38070843 (+) True AMCG00007951
AMCG00007947 mRNA upstream 405195 38018892 ~ 38026850 (+) True AMCG00007947
AMCG00007956 mRNA downstream 37121 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007959 mRNA downstream 127880 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007965 mRNA downstream 139527 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007963 mRNA downstream 184527 38621122 ~ 38627736 (+) True AMCG00007963
AMCG00007964 mRNA downstream 199887 38636482 ~ 38661331 (+) True AMCG00007964
TU34447 other upstream 19116 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 261984 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 285195 38144984 ~ 38146850 (+) True G27518
TU33841 other upstream 2811244 35611116 ~ 35620801 (+) False AMCG00007873
TU32939 other upstream 8657010 29765828 ~ 29775035 (+) False G26258
TU34527 other downstream 256144 38692739 ~ 38708915 (+) True AMCG00007970
TU34851 other downstream 1066484 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1395794 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1620037 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1804717 40241312 ~ 40247238 (+) True AMCG00008036

Expression Profile