RNA id: TU34503


Basic Information

Item Value
RNA id TU34503
length 1188
lncRNA type read_through
GC content 0.40
exon number 2
gene id G27581
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38671871 ~ 38729032 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAGTTTAGTttttttttttcaaaggggGTTGACACAGCAACGTGTCAGTAAGAACGTGGACGTCGCACCAGGAGAAGTGTGTCGATCTGCTGGGTGTGTTTCCGTGCCCTGGAACGGGCCACGCTGATTCACTCAGCCATTTTCTCCGCCAGACGGCACGACGCTTTGTGTGGCCGGTGCCCCCACTTCCTCAGGGGCGCAAATGGCCATGCTTTTGCTTTCCATACCAGGGCGTTTGTAATTAAAGACTAGCCGTGCAGTTGGGAATGGAGGAATTCACGTTGCGACGTCCACTTTtgctacaaacaaacaaacaaaaacacgcTGTCGGTTCACTTCCACGTCAGCTGTTTTTGCCGAGCGACTGATCCGTTCTGCCGGCTGATGCTCTCGCACTGTTTGTTCTTTGTTGATTTACTGTTGTCACAGCCatcattgtattataattaagaaACATCTTCATGCACTATGTATAAATCAGGTTATCCctactatattttaaaaaatataaatatatatatatataaataaacaatatccaGCCATGGTTAAAGTATTGAACTCTTATGGGTAgtctaggtttttttttttttgtgtataaaaataaaaggaaaaattagCAAAATCTCacaacacaagcaaacaaaaaaagggacCATTTTGTGTCTAggtttattctgtttttattatttttgactaAAACGTCATGGATGtctgaaatacacacaaacacaaacctttAATGTCTTTCATCTCACGATGGCatactaaaaagaaaacatgaaaaaagatAACTTGCAAAACTGGGAGGGGGAGAAGGGAAAATTTCAAACAAGAACTTTTTAAAGATGTGTAAAACGAGAGGCGGTTGGCGCTGCTCTTGCTGCTGCAAGGTGGGCTGAGTGGCTGAGTAGGCCTGTCCTGAGCGCAGGGGTGATAGACACTACATAGAGCAGGAGGGAAGCAACAGGACATCTACATGTTACCACAGCAGTTGGGCAActgttttgtatgtatataaataacagtCTATCTAAGGAAATTAATATTCGTAGTAAACTAGTCTATGGCGTAAAAACCTACCCTGTTCGACTATGTAGCATcttaataaattaaaggaataaaacCCCGAACTTACTTTTTCCCTTGTCAAAAGTTATTTATGAGTTTTTGCTTTAAATGGTGG

Function

GO:

id name namespace
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0000165 MAPK cascade biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34473 lncRNA upstream 189480 38481297 ~ 38482391 (+) True G27561
TU34465 lncRNA upstream 229800 38441536 ~ 38442071 (+) True G27553
TU34464 lncRNA upstream 231979 38439574 ~ 38439892 (+) True G27552
TU34393 lncRNA upstream 643948 38027380 ~ 38027923 (+) True G27497
TU34384 lncRNA upstream 654727 38016868 ~ 38017144 (+) True G27489
TU34587 lncRNA downstream 63417 38792449 ~ 38834594 (+) True G27648
TU34610 lncRNA downstream 126499 38855531 ~ 38855767 (+) True G27667
TU34617 lncRNA downstream 177022 38906054 ~ 38908182 (+) True G27670
TU34673 lncRNA downstream 325507 39054539 ~ 39055627 (+) True G27708
TU34674 lncRNA downstream 330499 39059531 ~ 39059734 (+) True G27709
AMCG00007964 mRNA upstream 10540 38636482 ~ 38661331 (+) True AMCG00007964
AMCG00007963 mRNA upstream 44135 38621122 ~ 38627736 (+) True AMCG00007963
AMCG00007965 mRNA upstream 66858 38576122 ~ 38605013 (+) True AMCG00007965
AMCG00007959 mRNA upstream 101648 38564475 ~ 38570223 (+) True AMCG00007959
AMCG00007956 mRNA upstream 195383 38473716 ~ 38476488 (+) True AMCG00007956
AMCG00007968 mRNA downstream 28824 38757856 ~ 38767584 (+) True AMCG00007968
AMCG00007969 mRNA downstream 39179 38768211 ~ 38784621 (+) True AMCG00007969
AMCG00007979 mRNA downstream 132495 38861527 ~ 38898891 (+) True AMCG00007979
AMCG00007981 mRNA downstream 171296 38900328 ~ 38904511 (+) True AMCG00007981
AMCG00007978 mRNA downstream 180253 38909285 ~ 38917976 (+) True AMCG00007978
TU34460 other upstream 235276 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 258942 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 501810 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 525021 38144984 ~ 38146850 (+) True G27518
TU33841 other upstream 3051070 35611116 ~ 35620801 (+) False AMCG00007873
TU34851 other downstream 774047 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 1103357 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 1327600 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 1512280 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 3263827 41992859 ~ 41993377 (+) True G28395

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU741884 True 2191 TUCP 0.41 2 NC_048571.1 79990609 ~ 79992859 (+)