RNA id: TU34553


Basic Information

Item Value
RNA id TU34553
length 813
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G27626
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38710852 ~ 38712337 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTGCACATCTCATGGCGGCAGTAAACGACTCGATCTTACCTCTGAATTTCAGTTCGTGTTCTGGCTCTAGCTGGAGGACCTGATCTTGTCTCCTCGCCATCTCCCAACGTGTCGTAGGTGCTTCACTGTAAACGGgctcagtgctgctgctgtgagGGTGCAATGCTGAGCGGGTACCGGTGCTGCGGTGACACGGCTCCTGCTACATATACAGATAAATAGGGATATTTCTGAGGATTGGCTGCTGTTTTTGGTACTATTGTTGTTgtgatgatggtgattattCCGTTTCTCCGGGCACGGGGAGTTGCTGGCGCGGCTCGGGCTGCTAGCGGCTGTGATGATGCAgcaggaaggaggtgagagagaggctgcCGGTTACGTCACGGCCACTGCATTAGCCACTCAGCGAAGGCGAGGTGAGGGAGCCGGGAGAGGGGAAGGAGGGCGACGGGAAGATGGGGGGCTGAGAATGTCCAGCGTGCAAGgtgtgccccccaccccctgcatACATACACCCGTCTCCGCTCTCGCTCTCACCCACATGGGTCAAACGCACAGCTCTGACTGAAAACAGAAGTCACAGAATTATCACCTGGGAGCAAGAAGAGGAGTGAATGACATCGCAGGAAGAGTAACCCAAGATGACAAAGGAAAGGAGTTTGGCGATAGgccaaaaaacaatacagcccCAATCCGATCACCTGCAGAGCCAAGGAGACACTGGATGGGCTCCCCAGGGAGAGAGCGAATGATGCAGGAAAAGGATCTGCTGGAGAAGAGGAGCGAGGAAATTGGGAGGCTGGACACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34469 lncRNA downstream 270990 38439603 ~ 38439862 (-) True G27557
TU34386 lncRNA downstream 693383 38017230 ~ 38017469 (-) True G27491
TU34352 lncRNA downstream 933534 37777069 ~ 37777318 (-) True G27463
TU34325 lncRNA downstream 1139971 37570259 ~ 37570881 (-) True G27438
TU34323 lncRNA downstream 1143286 37567203 ~ 37567566 (-) True G27436
TU34574 lncRNA upstream 36790 38749127 ~ 38767568 (-) False G27639
TU34572 lncRNA upstream 52107 38764444 ~ 38767568 (-) True G27639
TU34602 lncRNA upstream 63824 38776161 ~ 38779752 (-) False G27661
TU34601 lncRNA upstream 64900 38777237 ~ 38779752 (-) True G27661
TU34611 lncRNA upstream 143211 38855548 ~ 38855777 (-) True G27668
AMCG00007973 mRNA downstream 18078 38679465 ~ 38692774 (-) True AMCG00007973
AMCG00007974 mRNA downstream 31701 38676674 ~ 38679151 (-) True AMCG00007974
AMCG00007967 mRNA downstream 64870 38635057 ~ 38645982 (-) True AMCG00007967
AMCG00007966 mRNA downstream 98271 38608702 ~ 38612581 (-) True AMCG00007966
AMCG00007960 mRNA downstream 196608 38511919 ~ 38514244 (-) True AMCG00007960
AMCG00007972 mRNA upstream 21352 38733689 ~ 38743043 (-) True AMCG00007972
AMCG00007975 mRNA upstream 73199 38785536 ~ 38790785 (-) True AMCG00007975
AMCG00007976 mRNA upstream 81767 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007977 mRNA upstream 118768 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007984 mRNA upstream 192421 38904758 ~ 38906982 (-) False AMCG00007984
TU34421 other downstream 546310 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 618974 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1122327 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1139364 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1141568 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 334952 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 341816 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 376585 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 787984 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2303822 41016159 ~ 41017248 (-) True G28202

Expression Profile