RNA id: TU34572


Basic Information

Item Value
RNA id TU34572
length 3085
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G27639
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38749127 ~ 38767568 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttatttatatttttgttttaaacattctcCAGTTGGTGGCTCATTTGGGTTCAGGATGCTTTGCACAACGTTTCAGGACTGTGGATTAGGACTGTTCAGTTGCACAAGGGTGGGTCACTCACTCGACAAACAACAGACATTCTCCGattctcactcacacacaccactAACAGAAGATTTTAGTATATCCACTTAAAGCACAAGGAATGGAATTTAAACTGCTTGCAAaggtataaaaatatatccaatGTATATCACACCTGGAGGGGGGTTGGTggccattacttatttttacagGCCACAACAGCATGACATCGGACCCCGACAGGAGAGAGACAAAGGCAGATGAGAAGTGAGCAGTGGAGACACATTTGGTCCTTAATCCTGTGGGAGCCCCACACAGACAACGCTGAGACGAGGGGCGGACGCAGGAGGACTGCGGTCTGCAGGTGCCAGTCTTTAGAGTTCAAACACTGGGAAAGTGATCCTTTGTCCATTTTTCATGAACGATATGactgaatttgatttaattacttaaccaaaggaggggggggggtatgtgCTTCCCAGATTAACTGAAAGCCCAGGTGAGGATTCTTTCAGCCAATCTTTAAGAATTTAATGACATTAAGGTATAAGTACAGCCTGGTCTGGGAAGGAATGGAAtgacattttctatttattcaAATCTTctttacattgttattattaagtgcgagtgtgtgtgagagctaCATTTAGATAGTGGAGTGTGTCACTCAACCAACCAACCATCAATCAACAACCTCCCCCCCGCCTCTCCTGGCATGCAGAATTCCCTTCAGTAGTATTTGCAGCCATGATTAAGGCTGCTCTCAGTTCTGGTCCCAGCGCCGGGGGGTTCAGTTCAGGAGTCTCGCAGTGGAGACAGCTGGTACCTCCACAGAGAAACAATCTGTGAGTGAAGCAACACGGCCCAGGTGCGCGCAGAGCTCCATCATCACACAGAGACCTGCCAGCCCTCTCAAGACAAACGAGATGATATCAAGTCCAAGGCGTTGCTTTGGATACACCTCTGAGTGCAGCTGTGTCTCTGTCGTTCAGGCGCAGGACTGTGCCGGTCAGCTGCCTGGCGGGTCCCGTGGCTGTGAAGGGGGCAGGCTGTTTTCTGAGGGATTGCTGTGCAGGCAGCGCCCATCAAACCCAGCCATGGTGGAATACAATAGAAGAACAAGCCCTCTTCCGGTTGAGTTTTTAACTTGCACTTCccctcttccccctcccccaaagataaaaataaaaaagattagaaaaaaataaattaaaataagatcaaATATAATCtgactcaaaacaaacaaatgaacaaaaagagGCACAGTCTGTCTTAAAAGCAGGACAGTCTTCACTGTCTTTCatctcaaataaaaataaaaaaaacagaaactgtgCTGCTGCCACCCTTGGGAAAAGCTCAGCCGgtacacaacagcacagcaacacaacacaacaaacagagaccacacactgcactgaagcAGACAGGGGCAGTAGGGAGGATGATTTCCAACCTGATTTCCCCCCCCATATAAATCGTACAATCCACAACCCAGGTTGGGGGGGTTCTCCTATCCTCTGTGAAATGTCTTTAAGTGTTACTTCTCTCCTCACAGGTCTACAGATGTACATTATTCACTCATCACAGGATACGGCAGAAAGAAGAGGGCTTCAGGACAATCCAACAGACTGATGTGTAACATACAGGATACGCCCAGTAAAACAGAGAGGCTTAAAGAAAGAATACCGATATGACCCAgtttaaatagtgttttttaGGATAAGTGTTTTGAGTTAGAAGAATGGTACTCCGATCAGACACAAAGCGAACTGATATAAAAAGAATTGAACCTGGCCCTAGTTTTTCAGTTTGTAGGTGTTGGTCCGTGAAGTCCTGTAACTGTGTTTGTTAATTCgtttttagattattattttttttatagacaACGCAGTTCAGAAGACCCCATGGCTCTCCAGGAGCTGGGGTGACCTGCTCATGCCGGTCCAAAAATTCAGGGCCACGGCTATACCTTAGGCACAGCAGCTCTGACTGACAGCAGAGATAAGCTAATCACAGCAACCCGAGAAGAAGCCAACGAGGGGCAAACACAGATACAAAACCAAACTGGACAGAGCAAGACCAAACCATGGCTCAAGCAGGAGGGAGGCTGCAATCAACACGACGACAGAGACGAGGTCATACACGGAGAGTCCAGTGTGTTCCAATGTAGTGAAGGGCAAGCAGAATCTGTAGCTTGTGTTTTGTCCGTCTGACTCTAATCTAACCCCGTCCCCCCTCAAACCCATCCCAGCGTAGCTCTCTGGGCCCCCCTGCTTCTTGACGAGATCATTCAAATCAGTAATCGGCTAATCAACCTGGCTGGGTGGGGCCAAAAGTAGTGTTTCACAGACCTGATCCCGCCCCCCACCATCCCACTAGTTTCTGTTACAATTGCAATTCTCCTTGACTCACTGGCTCTCGACAGTTTGCTGAAGAGTCCGGATGCCTCAGCTTCTGTAATATGAGTCTCAATTAAGTTGTTGAGAGGCCTGTTTGAGCAGATaaacagcaggacagtgggGGCGCCCTAGGACTAGGGCTGAGAATGCTAGAGGTTGGGCAGTGATACCTGGGTGGGTGATTCACAAACAGGGCTCCCTGCAATACAGTGCTGAGGCGGGTCAGCTCAGACAAGGAGAGAGTGGGCAGTGTGTTTATATAGACTATGGCTTGGTACTGGGACGAACCATGCTTGGGTTCCTGGGTCTACAGTACTAGCTGTGCAAACGGGATCAGCATGGGTCCTCTTACTTAATTACTTACGTTTGTTAATAAGTTCTTAATACACATTCAACCAAGGCAGCAGAGGGGTTAGCAGTACAGGCTGGGTCACTgtctcaatcacacacacacacacacacacacacacacacactgaaggaTTACGTGGCCTTCACAGCGATCAGGACGAGGATGAGGACAATGACGATGACAAACAGGATAAAAATGACCAGCATCTTGCGGTTCTTCTTCTGGTACTGCTCTgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34553 lncRNA downstream 52107 38710852 ~ 38712337 (-) True G27626
TU34469 lncRNA downstream 324582 38439603 ~ 38439862 (-) True G27557
TU34386 lncRNA downstream 746975 38017230 ~ 38017469 (-) True G27491
TU34352 lncRNA downstream 987126 37777069 ~ 37777318 (-) True G27463
TU34325 lncRNA downstream 1193563 37570259 ~ 37570881 (-) True G27438
TU34602 lncRNA upstream 8593 38776161 ~ 38779752 (-) False G27661
TU34601 lncRNA upstream 9669 38777237 ~ 38779752 (-) True G27661
TU34611 lncRNA upstream 87980 38855548 ~ 38855777 (-) True G27668
TU34636 lncRNA upstream 138585 38906153 ~ 38907811 (-) True AMCG00007984
TU34638 lncRNA upstream 153402 38920970 ~ 38922688 (-) True G27686
AMCG00007972 mRNA downstream 21401 38733689 ~ 38743043 (-) True AMCG00007972
AMCG00007973 mRNA downstream 71670 38679465 ~ 38692774 (-) True AMCG00007973
AMCG00007974 mRNA downstream 85293 38676674 ~ 38679151 (-) True AMCG00007974
AMCG00007967 mRNA downstream 118462 38635057 ~ 38645982 (-) True AMCG00007967
AMCG00007966 mRNA downstream 151863 38608702 ~ 38612581 (-) True AMCG00007966
AMCG00007975 mRNA upstream 17968 38785536 ~ 38790785 (-) True AMCG00007975
AMCG00007976 mRNA upstream 26536 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007977 mRNA upstream 63537 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007984 mRNA upstream 137190 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007983 mRNA upstream 158617 38926185 ~ 38937663 (-) False AMCG00007983
TU34421 other downstream 599902 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 672566 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1175919 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1192956 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1195160 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 279721 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 286585 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 321354 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 732753 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2248591 41016159 ~ 41017248 (-) True G28202

Expression Profile