RNA id: TU34601


Basic Information

Item Value
RNA id TU34601
length 1964
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G27661
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38776161 ~ 38779752 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACTTCGTCCTCATCGGTTCCACCGCATTGGTGCCAGTTCATACTACTCTACttgtattcaaaacaaaacaataatgaaacaaaagacatctggagttttttattttttcattttatttaatttctaacGTCCAGCTTTTATATCCACCATGTGTATGACAAACGTTGCTCTTtgcaccgacacacacacacacaccagccctGGGATCAGCAAACAGAAATACCACAACAGCAGACCATTTCGTTTTTCTTCCTTGTTCCCCAGAACGATCACTCAGGTTTGGCATCGAGTCACTTTGGCAAGGCAGTAACCGAGCACACAGTGGGTTTTATACTCTTACAGATAAGCGCTTCTCTTGCACAACACCAGGGCAGCACTACTCCAGTTGGCTCAGTGGCATTAGTCCCCACTGCAGCGTGATCTTCTACAGGTCAAAGACAGAGGGTGGGACAATTACCTGATTGGAGTCACGATTTAGGTTGTACTGATAAGTCAAAACCCCTGTTGATTCCTGGTCGCTATTGGACAGACAAAACCCCCAGGCCCTGCAACAGAGTGGCCCCACCCAGGCCCCAGAGGAGCCCCCCAGTGTCTGCTGGGCTCTTAATTGGACCAATAATGGCCTGGTCAGTTTTTTTCAGCTCCAATCCAGGAGCATGCCAGGCTGGCCAGTAAGTGACCACAGCTGGGGGCCAGAGTGTCACACCAGGCCACAGACAAGGGGAGCCCTCCCGGAATAGGGTTGAGGAACTCGCTGCCTTCGGGGACTGGACATGCCCTGGGCTAAGTCAGCTGCTTGTGGTCTTCCCTGGACAAGCGTCACGCACATCTCCTGTTATTAAGGCGTTGACAGTTCAGCTGGCACAGCCCGGGCAGCCAGGTTCCTCCTCTAACCCCCCGCTTCTGACAATGCCTGCCTGAcgcaaacagaaaaacacccaGCACAGTGGAGTGTGTGGAtagtttaaaggaaaaaaaagaaaaaggcgaAAGCAtcgagaaaaaaaacagaattgagTTAATAAGAACAaagtggaaagaagaaaaataatgatttattattagtagtattaatacTATTTCATCAATTGGAATCTAGACTTGTAAAGGTCATTTGTTGAGACTGATCAGTGCGGTGGGGCTGGAGGCTGGAGGGCCATTAGACCAGTCTTCTCCTCTTGCAGTCGCGTTCCATCTGCTCTGCAGGGGGTCCGTCCTGGGCACCCAGGGGGGACACCATATTGAGCAGGGGGTCCTCGGAGGCCTGGCCGAACAGCGCCAGCAGCAGGGCCACTCCAAACCCTGTggctctctccccGTATGCACGGGGGAGGCGATGTCCACGTGCACCCAGACCCCTGGCCAGTCGAAGCCGAGGTGCGAGGCGATGAACAGGCCGGCGCAGGAGCTCTGGGCGTTCTCACGGTCCTGAGGAGGCAGGACACAACAATGAAACACACAAAGGAgggaaaagaaagcaaatgGTTGAGTGAAAGTGCCATGGTTTGTGGTAAAGCGAGCAGAGGCCAGTCAATGTGAGCGAATGCAGGTAAAGCCTCcctaattaatattattaacagcCCACAAGATTTCCATCTCCTGGGTGCAGTTAAAACACCCTTACTGTCACTATGGTTTTGAAATCGAGCACACCCGTTATGAGCCCTGCTTTCGGGCTGCCGTCATCTTGATAGACAAGTTCTGCCCTGACTGCAGAAAGTTAGAGcgattcaaaagaaaaagagctTCTGAATCTGTGACCAAtgccaaaaaagttaaataatcaTGATAAGTGATAATCGGGCAGAGTAATTTAACATGAATTTAAAGTAAtagtgaagttttttttttatccaactgaatcattataaaaaaaaaaataatgttacattAGGTTTACAGTTAGCCATTTAtttagaataatatattttaaagattgctTAAAGAATACCAGTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34574 lncRNA downstream 9669 38749127 ~ 38767568 (-) False G27639
TU34572 lncRNA downstream 9669 38764444 ~ 38767568 (-) True G27639
TU34553 lncRNA downstream 64900 38710852 ~ 38712337 (-) True G27626
TU34469 lncRNA downstream 337375 38439603 ~ 38439862 (-) True G27557
TU34386 lncRNA downstream 759768 38017230 ~ 38017469 (-) True G27491
TU34611 lncRNA upstream 75796 38855548 ~ 38855777 (-) True G27668
TU34636 lncRNA upstream 126401 38906153 ~ 38907811 (-) True AMCG00007984
TU34638 lncRNA upstream 141218 38920970 ~ 38922688 (-) True G27686
TU34645 lncRNA upstream 144829 38924581 ~ 38927571 (-) True AMCG00007983
TU34831 lncRNA upstream 675288 39455040 ~ 39455858 (-) True G27833
AMCG00007972 mRNA downstream 34194 38733689 ~ 38743043 (-) True AMCG00007972
AMCG00007973 mRNA downstream 84463 38679465 ~ 38692774 (-) True AMCG00007973
AMCG00007974 mRNA downstream 98086 38676674 ~ 38679151 (-) True AMCG00007974
AMCG00007967 mRNA downstream 131255 38635057 ~ 38645982 (-) True AMCG00007967
AMCG00007966 mRNA downstream 164656 38608702 ~ 38612581 (-) True AMCG00007966
AMCG00007975 mRNA upstream 5784 38785536 ~ 38790785 (-) True AMCG00007975
AMCG00007976 mRNA upstream 14352 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007977 mRNA upstream 51353 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007984 mRNA upstream 125006 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007983 mRNA upstream 146433 38926185 ~ 38937663 (-) False AMCG00007983
TU34421 other downstream 612695 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 685359 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1188712 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1205749 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1207953 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 267537 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 274401 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 309170 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 720569 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2236407 41016159 ~ 41017248 (-) True G28202

Expression Profile