RNA id: TU34638


Basic Information

Item Value
RNA id TU34638
length 631
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G27686
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 38920970 ~ 38922688 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTAGTCTTCTCTTGCTTGGGAGGCTCGGGGGCCCTGCTCGATTCCTGAGCAGCAAGGGTTGCAGGAGCATGCACAGGGagactggctggctggctctTGGGCTTGGGCTCAGGCTGCGAGGGTGCAGGCAGGGGGGTGTTCTGGTTGGAGGTGTTCAGGGTCTTGGCACGGGGGGCCGGGGTCTGTAGGGGTTTGTTCTGCCCTACCGGGCGCTGGACTCGTTGAGGTCCATTGGACACGCCCAACACACGCTGAGAAGGGGTCACTGCTGCTCCCTGCCGGCTCTGGGACACGGGAACCCGTTTGGGTCCGTCACCACTCATCTTCCCATAACCAGACAGTGGCTTCCCGGTTCTCACTGCATCCATGTCACTCTGAATATGATGGCCAAAGGATGAAAGGGTCTGAATATCCCCCTCCTGCGAACAATCCTCCCCCGTCCTATCGTCTGGAAATCAGTGTTTTATCGTCTAACAAAGACgttttgttttgaatctgcTAAATAATCCACCCAATTTTATGAATTCACTGATTTAAATGGTCTTCCCCAGCCCGCAGGCCGCGTTATCACTTGGTACGTCTGTATAATCAGTTTGAATTCAAATCTCCCTCTTTTAAATGCCTTTAAA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04115 p53 signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34636 lncRNA downstream 13159 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 65193 38855548 ~ 38855777 (-) True G27668
TU34602 lncRNA downstream 141218 38776161 ~ 38779752 (-) False G27661
TU34601 lncRNA downstream 141218 38777237 ~ 38779752 (-) True G27661
TU34574 lncRNA downstream 153402 38749127 ~ 38767568 (-) False G27639
TU34645 lncRNA upstream 1893 38924581 ~ 38927571 (-) True AMCG00007983
TU34831 lncRNA upstream 532352 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 841242 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 867858 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 919643 39842331 ~ 39847044 (-) True G27949
AMCG00007984 mRNA downstream 13988 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007977 mRNA downstream 84833 38831105 ~ 38836137 (-) True AMCG00007977
AMCG00007976 mRNA downstream 103238 38794104 ~ 38817732 (-) True AMCG00007976
AMCG00007975 mRNA downstream 130185 38785536 ~ 38790785 (-) True AMCG00007975
AMCG00007972 mRNA downstream 177927 38733689 ~ 38743043 (-) True AMCG00007972
AMCG00007983 mRNA upstream 3497 38926185 ~ 38937663 (-) False AMCG00007983
AMCG00007982 mRNA upstream 20147 38942835 ~ 38949522 (-) True AMCG00007982
AMCG00007988 mRNA upstream 54227 38976915 ~ 38985485 (-) True AMCG00007988
AMCG00007990 mRNA upstream 110099 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007989 mRNA upstream 147892 39070580 ~ 39078098 (-) True AMCG00007989
TU34421 other downstream 756428 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 829092 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1332445 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1349482 37570957 ~ 37571488 (-) True G27439
TU34324 other downstream 1351686 37567617 ~ 37569284 (-) True G27437
TU34684 other upstream 124601 39047289 ~ 39049597 (-) False AMCG00007990
TU34686 other upstream 131465 39054153 ~ 39055679 (-) True G27720
TU34691 other upstream 166234 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 577633 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 2093471 41016159 ~ 41017248 (-) True G28202

Expression Profile