RNA id: TU34686


Basic Information

Item Value
RNA id TU34686
length 1527
RNA type TUCP
GC content 0.42
exon number 1
gene id G27720
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39054153 ~ 39055679 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACtctgaacaaaatatacaatttatttaaaatatgttaatacaaCCATCAGTATTTTCCAGTAATTACAAAATCAGTAGTAGTTCttattgtttcttcattttctctttcaatAATAAAAGCTCTAACTTACAGTCCGGattctgctttaaaacaatgAGATTTCATAGAGACGCTCAAGGGTGTagaataaagagagagagagagagagaaaagacaaaACCAGGGAACAAAATCATCTTAGCAATGCCCATCTTTCACCTTCCCCCTTTCCACACACTGTCCTGACCTGGGCTGAATACCGAGTACTCAAACCCACCTGTACAGAACAAAAGCTTCTCTTTGCTCCATATGAGGTGCATCTGCTTGACAACTTTCAAGACAGTTTTGCTTCGGTGCAAATTTTGCTCCATTTATTCTACCAGAAATCCCCACTCCCATGCCACTGTCTCTTGCAGCATTTCAACACTACGTCAACGTTCAGAGAAACGGATGCCAGTTTCggcaggggaagaaaaaaaatgccgCCCATCGCCCTCTCCCCTGTGTGATAGAGCTGGGTGACAGCACCGGCGCACAGTCAAGGTTAGAGATGCCGGAGGGGCTGTTTTTTGATCATCAATATCTCGCTCCCCAGAAAAACAGATGTGTCAGAAAGTCGACTGTGGATGAGAGGCTTGGGGGGCGCAGCTTTGGCGACCTAGCTTGGTCCTCTTCACAGCTTTGTCCTCTGTGCCAGGGCTGTCTCTGCAGACTCATTAATCTGTTCTCTCAAAAAAAAATTCTAGAGCTGCTGTCCCCTTTCTCTCACTGTGCTACCACTGCAAAAGCCCAGTGCTTCTACCCCCAGGGCAATTAAACGCATCAAGAAACAAATCTGTTCATTACCATTAACTCCTCAAGGCCATTACTACGCTTTTGGGACATTCTGTGTGCGTACATGTCTCtccatggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaatagCCTCTCCATGCGTCTTGCCCTACTGTGTCCGTGCTTCAGCATGATATTGCGGGAGCGGCTGCTGGAATACTAAACGCACACACAGGTGTGCGGCTTCCTTCAAAACCTGgacattcattatttacaaaatatttagatAAATATAGATTTGAATTATTAACAATTGTGCACAGCCAAAGAGTTCTTTTGAGCTCtggctttgtaaaaaaaaaaaaaagcatgatcatgatgataataaaataactaacatggaaaaaaatatatacaaatttgtACACAAAGCTTTACACTGTACATGATAGAGGAAAGAGGAGAAATCAGGAGTGCTCTACCCAGCAAACTGGGTTTACATTGGTCAGTAGGGGTCACTGTGCTAAAGGAGATGCTTCTTCCCAAAATCTCCAGTCATGAGATCCAGGATCAAGCAGGCAAGTCCTCTCAtcatataatgataataataataaaataaaataaaataaaatcagtttgtaTGTGGTACATTAAAACAGTGAAATGCTGCCATGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34645 lncRNA downstream 126582 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 131465 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 146342 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 198376 38855548 ~ 38855777 (-) True G27668
TU34601 lncRNA downstream 274401 38777237 ~ 38779752 (-) True G27661
TU34831 lncRNA upstream 399361 39455040 ~ 39455858 (-) True G27833
TU34927 lncRNA upstream 708251 39763930 ~ 39764417 (-) True G27904
TU34962 lncRNA upstream 734867 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 786652 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 786652 39842331 ~ 39847044 (-) False G27949
AMCG00007990 mRNA downstream 4833 39032787 ~ 39049320 (-) True AMCG00007990
AMCG00007988 mRNA downstream 68668 38976915 ~ 38985485 (-) True AMCG00007988
AMCG00007982 mRNA downstream 104631 38942835 ~ 38949522 (-) True AMCG00007982
AMCG00007983 mRNA downstream 116490 38926185 ~ 38937663 (-) False AMCG00007983
AMCG00007984 mRNA downstream 147171 38904758 ~ 38906982 (-) False AMCG00007984
AMCG00007989 mRNA upstream 14901 39070580 ~ 39078098 (-) True AMCG00007989
AMCG00007993 mRNA upstream 32878 39088557 ~ 39091895 (-) True AMCG00007993
AMCG00007992 mRNA upstream 58032 39113711 ~ 39150259 (-) True AMCG00007992
AMCG00007994 mRNA upstream 116809 39172488 ~ 39204907 (-) True AMCG00007994
AMCG00007997 mRNA upstream 150628 39206307 ~ 39213355 (-) True AMCG00007997
TU34684 other downstream 4556 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 889611 38161286 ~ 38164542 (-) True G27522
TU34400 other downstream 962275 38085929 ~ 38091878 (-) True G27502
TU34329 other downstream 1465628 37573034 ~ 37588525 (-) True G27442
TU34326 other downstream 1482665 37570957 ~ 37571488 (-) True G27439
TU34691 other upstream 33243 39088922 ~ 39091755 (-) False AMCG00007993
TU34865 other upstream 444642 39500321 ~ 39504592 (-) True G27861
TU35307 other upstream 1960480 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 2143810 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2791254 41846933 ~ 41849890 (-) True AMCG00008085

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1713847 True 2188 lncRNA 0.46 1 NC_048581.1 85223513 ~ 85225700 (+)