RNA id: TU34770


Basic Information

Item Value
RNA id TU34770
length 252
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G27781
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39266422 ~ 39266673 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttttaaaaattttaataataaatatacacattttgtacaaaattGTTAATTGAAAACCAATGCACTAAATGGTGCTTTAcgatgacattttaaaatacatgtgttaTTTGCCTGAAGATAAACTGGGACATTTTGACACGCGGAATGCTGACCTTTCACAATGCATCTTTCACTTTAAATGCTGTGTTTTGTGCTGGTGTTTTTACATAGGAATTACTTATGGTTTTATTATATACTAATTACTTTGAT

Function

GO:

id name namespace
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05012 Parkinson disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34734 lncRNA upstream 58129 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 58129 39206381 ~ 39208293 (+) False G27760
TU34674 lncRNA upstream 206688 39059531 ~ 39059734 (+) True G27709
TU34673 lncRNA upstream 210795 39054539 ~ 39055627 (+) True G27708
TU34617 lncRNA upstream 358240 38906054 ~ 38908182 (+) True G27670
TU34781 lncRNA downstream 24295 39290968 ~ 39291221 (+) True G27788
TU34870 lncRNA downstream 243738 39510411 ~ 39592411 (+) False AMCG00008007
TU34891 lncRNA downstream 273709 39540382 ~ 39541917 (+) False AMCG00008010
TU34873 lncRNA downstream 314106 39580779 ~ 39592411 (+) True AMCG00008007
TU34902 lncRNA downstream 337939 39604612 ~ 39604828 (+) True G27881
AMCG00007998 mRNA upstream 26794 39238048 ~ 39239628 (+) True AMCG00007998
AMCG00007991 mRNA upstream 153423 39104175 ~ 39112999 (+) True AMCG00007991
AMCG00007985 mRNA upstream 197116 39060647 ~ 39069306 (+) True AMCG00007985
AMCG00007987 mRNA upstream 213502 39050962 ~ 39052920 (+) True AMCG00007987
AMCG00007986 mRNA upstream 253571 39004001 ~ 39012851 (+) True AMCG00007986
AMCG00008001 mRNA downstream 110305 39376978 ~ 39378054 (+) True AMCG00008001
AMCG00008004 mRNA downstream 145017 39411690 ~ 39413775 (+) True AMCG00008004
AMCG00008005 mRNA downstream 179397 39446070 ~ 39455574 (+) True AMCG00008005
AMCG00008003 mRNA downstream 189990 39456663 ~ 39463302 (+) True AMCG00008003
AMCG00008002 mRNA downstream 206143 39472816 ~ 39482333 (+) True AMCG00008002
TU34527 other upstream 557507 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 829827 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 853493 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1096361 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 1119572 38144984 ~ 38146850 (+) True G27518
TU34851 other downstream 236406 39503079 ~ 39504377 (+) True G27847
TU34945 other downstream 565716 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 789959 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 974639 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2726186 41992859 ~ 41993377 (+) True G28395

Expression Profile