RNA id: TU34851


Basic Information

Item Value
RNA id TU34851
length 1299
RNA type TUCP
GC content 0.56
exon number 1
gene id G27847
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39503079 ~ 39504377 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCGCACAGCTCCTCGGACTGCCTGGTCATCACCATCATGGAGATGCCGGGCGACACCCCGTCCTCCTCAGAGACCATGAGCATGCTGAACATGGTGCGTCTGTACCGGCCGCCCAGCCTGGACTCGCTGCCCTGCCACCTGCCCATGCAGAAGTGCAGGGCCTGGACCTCGCGCACCTTCCCTCGCTTCCTCATCGGCGTGCTCTGCCTCATCTACTTCAGCTCCCTGCCGCTGGGCATCTACCTGCTGATGATCCAGCACCTCACGCTGGGCGTCATCCTGGTCAGCCTGGTGCCCTCCACCCTCGTCCTGTGCGTCTTCTACGGCTTCTGCCAGTGCCTGTGCCACGAGATCATGGAATCCATCGCCACATGACCCCGGGGGGAAGGAGGCAGGAGTGTGGGAGGGGTGGTGGGTGAGGTTTGGGGTTCTCCTGCAGTAGACCCAACTAGACTGGACTAGTGGGAAAATCCAGCAGCCAGTGCATCGTCAACCCCTTACGTCGGCCTTGCTTTGTCCCCCGGGGCCGATTCTCTCCACGCGCCGGCAGCTCCAGTAACCCCACCTCTCCTCTGTTTCCcatcctctgcctcctcccccTGTTGTTTTGCTGCCCCCGGCCGGACACAGATCTGGAACTTTAGCGGAGTGAGGCGAGCCGAACCATACCCGGCCGTGCCCTGCCGTTGCCAAGCTGTGGTGGCATGTGCTGCGTCCGGGCCTGGGGCCTCTTAGAGCCCACCACAGAACCACAGCTGCGCTCACTGTGCATGCAGACAGCTCCAAGGTTGCTATCAGGAGCTTCCCCCTGCAACGGGGACACGGCTCCCCATTGTCATCCAGTCCAGTGTGGAGAAAAGCGACGGCTGGGGTGTGATTGGCGTGTGCTTATCTCTGGAAAAAGTCCTTAAATACAAAGGTGAATTAAGAAATTCAAAATGAATCAAGATTTTGTAGTATTCCGTTCTCAGACCAAAAAGGGCCTAAATCCCCATCATGATCATTCAGCTGTGATGTTAGATAATACTATGAAATTATCCATCTTGCCTTCTGCCACGTAAAACTGCATACATGGGGTGCAGAGCTCTGGGTGGAATTGGAAGAGTGGCTTAATATCAACCCAGCGGGCACACAGCGTCCGTCTGCACATCTGTACATGTATGGTGTTAATGTACTTTCTGGAGGTTTAAATCTGTCGGCATGTCTGCACCATGGTTTTGAGCAGAACAGCAACGTCTGCCTTTCTCTTTGCTGAGCAAGACTAGAGTGACACCCAGAACCGCCAAACTGTTATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34781 lncRNA upstream 211858 39290968 ~ 39291221 (+) True G27788
TU34770 lncRNA upstream 236406 39266422 ~ 39266673 (+) True G27781
TU34734 lncRNA upstream 294786 39206381 ~ 39208293 (+) True G27760
TU34735 lncRNA upstream 294786 39206381 ~ 39208293 (+) False G27760
TU34674 lncRNA upstream 443345 39059531 ~ 39059734 (+) True G27709
TU34870 lncRNA downstream 6034 39510411 ~ 39592411 (+) False AMCG00008007
TU34891 lncRNA downstream 36005 39540382 ~ 39541917 (+) False AMCG00008010
TU34873 lncRNA downstream 76402 39580779 ~ 39592411 (+) True AMCG00008007
TU34902 lncRNA downstream 100235 39604612 ~ 39604828 (+) True G27881
TU35006 lncRNA downstream 453610 39957987 ~ 40003700 (+) True G27960
AMCG00008008 mRNA upstream 60 39494845 ~ 39503019 (+) True AMCG00008008
AMCG00008002 mRNA upstream 20746 39472816 ~ 39482333 (+) True AMCG00008002
AMCG00008003 mRNA upstream 39777 39456663 ~ 39463302 (+) True AMCG00008003
AMCG00008005 mRNA upstream 47505 39446070 ~ 39455574 (+) True AMCG00008005
AMCG00008004 mRNA upstream 89304 39411690 ~ 39413775 (+) True AMCG00008004
AMCG00008013 mRNA downstream 5082 39509459 ~ 39511872 (+) True AMCG00008013
AMCG00008012 mRNA downstream 7896 39512273 ~ 39512791 (+) True AMCG00008012
AMCG00008010 mRNA downstream 35843 39540220 ~ 39545607 (+) True AMCG00008010
AMCG00008009 mRNA downstream 45699 39550076 ~ 39555822 (+) True AMCG00008009
AMCG00008011 mRNA downstream 64066 39568443 ~ 39570932 (+) True AMCG00008011
TU34527 other upstream 794164 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1066484 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1090150 38355929 ~ 38412929 (+) False AMCG00007957
TU34423 other upstream 1333018 38168570 ~ 38170061 (+) False AMCG00007952
TU34416 other upstream 1356229 38144984 ~ 38146850 (+) True G27518
TU34945 other downstream 328012 39832389 ~ 39834936 (+) False AMCG00008020
TU35023 other downstream 552255 40056632 ~ 40059386 (+) True G27974
TU35066 other downstream 736935 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 2488482 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3601336 43105713 ~ 43108242 (+) True G28636

Expression Profile