RNA id: TU34927


Basic Information

Item Value
RNA id TU34927
length 488
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G27904
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39763930 ~ 39764417 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaccatccccggaggtgggtcccatcatgggatcctgagctcccccagatcttgtatttgccagttccTAAAGGCTTCCTCcgtgcccctctgatggacctccagattgacatagtccctTATAAgcaccatgcccctccgcgcgatgacaattgggtccagctcctgcttattgaatagacagatgttccgtccctcccacagggcctgcttcactgcgcagacaacacgccaccagcacctcagggtggaTGATGTCAAtcccctggctggaccatataggatctgctgggcggtcgcccgcacaggaacggcaaacctgtggaggaacggagaaaacaggagccagaccctgtaggcggaggggcaatccctaaagatatgagcctccgtctccttccccaggcaacccttgtaagggcagatgtcataaggggctaggccccttctgtgcatgaacactcgggtggggagacaccgactcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34831 lncRNA downstream 308072 39455040 ~ 39455858 (-) True G27833
TU34645 lncRNA downstream 836359 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 841242 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 856119 38906153 ~ 38907811 (-) True AMCG00007984
TU34611 lncRNA downstream 908153 38855548 ~ 38855777 (-) True G27668
TU34962 lncRNA upstream 26129 39790546 ~ 39791484 (-) True G27927
TU34987 lncRNA upstream 77914 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 77914 39842331 ~ 39847044 (-) False G27949
TU35107 lncRNA upstream 503855 40268272 ~ 40273788 (-) True AMCG00008042
TU35109 lncRNA upstream 512746 40277163 ~ 40277647 (-) True G28036
AMCG00008019 mRNA downstream 135828 39592332 ~ 39628102 (-) True AMCG00008019
AMCG00008016 mRNA downstream 197376 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008014 mRNA downstream 221984 39528389 ~ 39541946 (-) True AMCG00008014
AMCG00008017 mRNA downstream 238604 39518444 ~ 39525326 (-) True AMCG00008017
AMCG00008018 mRNA downstream 246663 39513466 ~ 39517267 (-) True AMCG00008018
AMCG00008025 mRNA upstream 165114 39929531 ~ 39945352 (-) True AMCG00008025
AMCG00008026 mRNA upstream 217195 39981612 ~ 39984433 (-) True AMCG00008026
AMCG00008029 mRNA upstream 222511 39986928 ~ 40008602 (-) True AMCG00008029
AMCG00008028 mRNA upstream 286612 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008032 mRNA upstream 313091 40077508 ~ 40091201 (-) True AMCG00008032
TU34865 other downstream 259338 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 672175 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 708251 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 714333 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1599388 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 1251742 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1435072 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2082516 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2996587 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4653457 44417874 ~ 44418196 (-) True G28970

Expression Profile