RNA id: TU34962


Basic Information

Item Value
RNA id TU34962
length 867
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G27927
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 39790546 ~ 39791484 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGgataaaaatgctgaaaagttTATTAAATTCACAGGCAGTATTGTAAAGATTGTTTCTtctttcaattaataatttaaattcagttcaCAACCATGTCTTCCAGTGCCTTCTCTGGTTAGCTCCATGgtcattttaaatagaaaataaaacaaacaattttgcATCAttctttagaaacaaaacacaaaaacaatccaaataacaatacaattaaaaaataacaattaatttaagaaaaatccaggctttcaaagcaaacacaaaaatatataatcccgCTTGCTCCAGGCAGACGGAGTTGTCAACAAATGGAGACGGAGGAGCCAGTCTAGGAACTTTCTGATTGGTGCATTTCAGCGATTATGACAGCAGGTAGGGcaaatactgaaaacaattattataagGGTTGAATTGGGTCCTGATTTAGTGGAAGAAGTAGCGATTGAAGAAATGGGGTTATTTTGGCCTAACCCCCTTGGCTGAAGGAACAATAAGATGCCCTTGTGGCATTACTGAAGTGAATCTAAGGCTGTGAAAGGGGGCTGTGGGGACACTAAACTATAACAGTTTCCGTACATAAGAAACAAGTCCCTTTTTTCTGGTCTTCTAAGGCACTAACACTAGAAAAGAGAAATATCAAGAACTTTGAAGGAGGAGAGGggcctgaaataaataattattcccCCAGTAGCCAGCAGGAGGCAGGTCAGAGGTATAGGAAGGGGGGGACGGGACAACTGGCTCATTAGCGGCGGGATGGGTTGGGACACTTCAGGATGTCGTACTTCACATAGCCCACGCGGTCCACCTGGCGCCGAGAGTTCACCCTCCAGTAGTAACTCTCTCGGCAGAAATAGAAGGAtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34927 lncRNA downstream 26129 39763930 ~ 39764417 (-) True G27904
TU34831 lncRNA downstream 334688 39455040 ~ 39455858 (-) True G27833
TU34645 lncRNA downstream 862975 38924581 ~ 38927571 (-) True AMCG00007983
TU34638 lncRNA downstream 867858 38920970 ~ 38922688 (-) True G27686
TU34636 lncRNA downstream 882735 38906153 ~ 38907811 (-) True AMCG00007984
TU34987 lncRNA upstream 50847 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA upstream 50847 39842331 ~ 39847044 (-) False G27949
TU35107 lncRNA upstream 476788 40268272 ~ 40273788 (-) True AMCG00008042
TU35109 lncRNA upstream 485679 40277163 ~ 40277647 (-) True G28036
TU35108 lncRNA upstream 487243 40278727 ~ 40288574 (-) False AMCG00008042
AMCG00008019 mRNA downstream 162444 39592332 ~ 39628102 (-) True AMCG00008019
AMCG00008016 mRNA downstream 223992 39557576 ~ 39566554 (-) True AMCG00008016
AMCG00008014 mRNA downstream 248600 39528389 ~ 39541946 (-) True AMCG00008014
AMCG00008017 mRNA downstream 265220 39518444 ~ 39525326 (-) True AMCG00008017
AMCG00008018 mRNA downstream 273279 39513466 ~ 39517267 (-) True AMCG00008018
AMCG00008025 mRNA upstream 138047 39929531 ~ 39945352 (-) True AMCG00008025
AMCG00008026 mRNA upstream 190128 39981612 ~ 39984433 (-) True AMCG00008026
AMCG00008029 mRNA upstream 195444 39986928 ~ 40008602 (-) True AMCG00008029
AMCG00008028 mRNA upstream 259545 40051029 ~ 40061973 (-) True AMCG00008028
AMCG00008032 mRNA upstream 286024 40077508 ~ 40091201 (-) True AMCG00008032
TU34865 other downstream 285954 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 698791 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 734867 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 740949 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 1626004 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 1224675 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 1408005 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 2055449 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2969520 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 4626390 44417874 ~ 44418196 (-) True G28970

Expression Profile