RNA id: TU35023


Basic Information

Item Value
RNA id TU35023
length 688
RNA type TUCP
GC content 0.49
exon number 3
gene id G27974
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40056632 ~ 40059386 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAAAGTTGAAAACAGCTTTATTTCTAATCAGTTCTGTACAATGCTGGGATGGGGCAGATAGCTTTCCTGACCAGTACAAGAAGAAGGTACCAAAAGAGAGTGCTTTCAATTGAAGGTTGGAGTAGACAAAGATTTCCCAGAGTCTTGTTGTGGCAGTGATGgggggatggggaggggggttggggAGGAGGGGAGTAGAGGGGGGTGTTGTGGCAATCAGTTCTCCCTTCTCGGTTTCTTTCTGTCGTTCGTTCTTTCTCtcgatttcattttttttctgattctGAAGCGAAACAAGGTTGCGCTGGCATATTGTCTCTACGGGAGCAGCGTCAAAGAGTTAAAAAACCTCTTGGAAAAACAGACTGTCACACACAAGGGTTGTCGAGGAATGTTGGTCTCTTACTGCACATTCTCCATCAGCTTCAGCCACTCATCAAAGTCAATCTTGCCGTCATTGTTTTTGTCTCCCTCGGCCATCAGCTCATCCACCTCCTCATCTGTCACGGGCTCCCCAGCAGAGCGCAGGATTTCACCGAACTCCTCGCGGTCAATGTAGCCGTCACCATTCCTGCAAAGACGCGGAAGAACTCTGCCAACTCTTCCTCGCTCTTTCCGGCCTGATCCTCTTTTAGCTGCTGCACCATCATGACCAAGAACTCCTCGAAGTCAATGGTACCGCTgcc

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35006 lncRNA upstream 52932 39957987 ~ 40003700 (+) True G27960
TU34902 lncRNA upstream 451804 39604612 ~ 39604828 (+) True G27881
TU34870 lncRNA upstream 464221 39510411 ~ 39592411 (+) False AMCG00008007
TU34873 lncRNA upstream 464221 39580779 ~ 39592411 (+) True AMCG00008007
TU34891 lncRNA upstream 514715 39540382 ~ 39541917 (+) False AMCG00008010
TU35105 lncRNA downstream 218028 40277414 ~ 40277687 (+) True G28032
TU35194 lncRNA downstream 604586 40663972 ~ 40721691 (+) False AMCG00008051
TU35229 lncRNA downstream 692089 40751475 ~ 40755976 (+) True G28140
TU35231 lncRNA downstream 699312 40758698 ~ 40759010 (+) True G28141
TU35233 lncRNA downstream 701880 40761266 ~ 40761633 (+) True G28143
AMCG00008024 mRNA upstream 80781 39972563 ~ 39975851 (+) True AMCG00008024
AMCG00008023 mRNA upstream 208386 39843224 ~ 39848246 (+) True AMCG00008023
AMCG00008020 mRNA upstream 221680 39817027 ~ 39834952 (+) True AMCG00008020
AMCG00008021 mRNA upstream 247603 39797335 ~ 39809029 (+) True AMCG00008021
AMCG00008022 mRNA upstream 265968 39784824 ~ 39790664 (+) True AMCG00008022
AMCG00008027 mRNA downstream 3335 40062721 ~ 40074110 (+) True AMCG00008027
AMCG00008030 mRNA downstream 15840 40075226 ~ 40076278 (+) True AMCG00008030
AMCG00008031 mRNA downstream 41800 40101186 ~ 40114340 (+) True AMCG00008031
AMCG00008035 mRNA downstream 112311 40171697 ~ 40172836 (+) True AMCG00008035
AMCG00008037 mRNA downstream 148751 40208137 ~ 40213983 (+) True AMCG00008037
TU34945 other upstream 221696 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 552255 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 1347717 38692739 ~ 38708915 (+) True AMCG00007970
TU34460 other upstream 1620037 38432045 ~ 38436595 (+) True G27551
TU34447 other upstream 1643703 38355929 ~ 38412929 (+) False AMCG00007957
TU35066 other downstream 181926 40241312 ~ 40247238 (+) True AMCG00008036
TU35555 other downstream 1933473 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 3046327 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 3087387 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 3233210 43292596 ~ 43301422 (+) False AMCG00008132

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_06297032_06300530.mRNA True 613 mRNA 0.46 5 CI01000001 6297032 ~ 6300660 (+)