RNA id: TU35176


Basic Information

Item Value
RNA id TU35176
length 301
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G28095
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40627777 ~ 40632764 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGATGTGGGATCTTTCACGTAATGAGCTTGTTGGAGTTTACGTACTGGGTCAGAATTCAAGACCTTGTCATTGCTGAGCGACTGGTCCTCCTTCGATTTCACACATCCCATTGTTCTCCCTGAAATTTTTTAACAGATGTCAAAACTCTGAAATTGAGAAGATTGGCAAATTCCAGAACTTTTTgtgtattctttttattttatttgaaagagcGCTTTAATCATAAAAAGTGAGCATTTCCATGTCCCCGATATCAAGTACTGCAGAAGACCAAGCCAGACTGTCAGCAGCATTAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35108 lncRNA downstream 339203 40278727 ~ 40288574 (-) False AMCG00008042
TU35109 lncRNA downstream 350130 40277163 ~ 40277647 (-) True G28036
TU35107 lncRNA downstream 353989 40268272 ~ 40273788 (-) True AMCG00008042
TU34987 lncRNA downstream 780733 39842331 ~ 39847044 (-) True G27949
TU34988 lncRNA downstream 780733 39842331 ~ 39847044 (-) False G27949
TU35192 lncRNA upstream 27117 40659881 ~ 40663760 (-) True G28110
TU35203 lncRNA upstream 31153 40663917 ~ 40667862 (-) True G28119
TU35228 lncRNA upstream 115542 40748306 ~ 40750443 (-) True G28139
TU35294 lncRNA upstream 350855 40983619 ~ 40984904 (-) True G28190
TU35308 lncRNA upstream 385480 41018244 ~ 41019422 (-) True G28203
AMCG00008044 mRNA downstream 212019 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008041 mRNA downstream 271030 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008043 mRNA downstream 329109 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008042 mRNA downstream 348871 40273552 ~ 40278906 (-) False AMCG00008042
AMCG00008040 mRNA downstream 401371 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008052 mRNA upstream 36906 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008055 mRNA upstream 123019 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008054 mRNA upstream 187085 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008056 mRNA upstream 214238 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008053 mRNA upstream 235889 40868653 ~ 40875437 (-) True AMCG00008053
TU34865 other downstream 1123185 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1536022 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1572098 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1578180 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2463235 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 383395 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 566725 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1214169 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2128240 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3785110 44417874 ~ 44418196 (-) True G28970

Expression Profile