RNA id: TU35203


Basic Information

Item Value
RNA id TU35203
length 3646
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G28119
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40663917 ~ 40667862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTATAATAACCCTGACATATGTGAATAGTTAAACAGATACAAAGTTGTATAAGAATATTTTGCAGTGTacgaacaaaaatatatataatttgcttttcttcagtAAATTGAATTTAGGTAGTTGTATAAAGTGAGTAACTGGTGTCCACGCAGGTTTACATGTGTATCTTGCGTTTTATTGCTCTAAAGATGGATGAAGTATTAGATTTCTGTATtagcctttatttttttctttaaacttaCATTTATAGGAGCTAAATTAGAATGAACATGGTTTGTGAATTGGCAGATATACAGTTGCATAATTGTCTatgatgtgctttaaaaaaaatgtatatgtaaagaAATAATGTGTCCCTCTCCCATGAAGAGAACAATTTGCCCAATTAGATTGGATGAATTCCCCATTTGATTGATTTAGAATTTTAGGCTGATTTCCTTGGTTAACAATTAactaaaacatgtatacatatacatacatacattatttatctgAGGGGTGCTGTTCAGCTTGGATAAATCAGTAAATAGTGCTGCAAAACAGGAAAGCAGTTTGCAAGTGGTCAAAGGCTTTCTGATGCGCTTTTGGCCAGTAGAGATCACTCTATCAGAACGACTCGAGGATCATGCTTTGTGGAGGATGCCTTTAAAAACAGCATTGAATCTCCCCGGCATTGTGACAGTGTACAGCCTATAACTCACAAGAACCAGATTGGATTTTAATAGCATAGCTACCAGCAAACCAGACCCACAGaagtaaagtaaaagtaaaacgGTCATCAAAGGgtctaattaagaaaaataactagATTAATTAGATAATTGAGAGTTCTACAGGAACAAAAATTATATAGTGACAAGGCACTCCACAAAGTCTCATTCTGAGGCAGTACAATGATGAAAGAAAGAAGTATGCTTTACTGGGCTTCAACCCTCAGTTGTTTTCTATGGAGATGGGACTTAATCCCTTCTCTTCCTGCTCTGTAACAAGTGAGCTCCTAGAGCCGGCTTTACAGGTGGAAACAACATGACAGAtgagaaatgaaagcaaaaccaaaaatacattataaactgCTTCAGCAacctgttaaaaacaaactccaTCTCCGCTTCGCACGataacttattttttcagcCATCACAACATTAATTGCTTACTACTGTAAGCTTGCTGAGGAACCACTACTGTTTTATGAACTTGTATTTACAGcagttaataatataaatagaaatacCATAAAACTCCATTGCTGCTTGTACTTTTTGGAAAAACCTTAGACTATGCTGAACGTTTACATTCACAGTACGTTTAGTTTGATTCATATTTGCTCCATTCCATTTGGGTGACTGCTTGTTAGATTATGAGGAAAATGACAAGAGCTGTCTTATGACAAGTTGTACTACTTCCAGATGACAGGATAATATTAATAACCCACAATGAGCGACCAGTTGATGTCCGAGTGGCAAACAAGACCCACACACTTCTCGAAGGCAGCAGCAACACtagaatgcatttcatttctaCTCTGTGATCAGCAGTCTTTCAAAAGATgagacaaaaaatgaaattccaGCTATTCTGACACAGTACATCTCTGGCCATGAAACAGATTTAAGATTGTTTTTACTTTGATATAAAAGTTAGAGAAGTGTTGAATTCCAGTCTTCTATCCACAACAGGATGGTTTGCTAACGTTTCAATTGTGTTTTGCTGTGGAAAGCATGTACATTATGGGGTGGCTGTCTCCCCCCACCCTAGAGTGCACAAATCTGGAAATATGAAACATGAAAAGCTATTAGGTGATATTgcttacttttgtttgtttttttcttctgtatattAAGCAGGACCTCAAAATGACAACACATCACCTCATGAATCTTTCTTACTTAATCTGGGaggaaaaacaatacacaactgCTCACTGAAGGCTCCACTTGCGTTAGCCCCATCCCCTTCTAAAGGGAAGCGAAGCCAAAGTATCCATCAAAAAGCAGCTCACAACTTTACAGACCAAGTAATTATAAATGGGTGTTTTTTCATCCCACCTTTTTAAAAACGAACAAACCGAATAAGTGCATCTGCTCACAATGTCCCACTGTGGTAGCTATTTGGCTGAAGCTTGAGgcatccattttgtttttcctccaaaGGTTTCTGTGAGCTTCTCTAAACTAGCACTTTTAAAACCCGttaagattttactttttaaatagcCTTCTTTTGTTGTGTGTACGTCTACCATTAGGTATGTGTGTAGTTACTCCTcgtacttttttgtttaattattattattatttttatttttttaagaacaacAGTATTTGACAGGACAAAAACAGTTTACCTAATCTCTtccattttcttaaatatacacACGGCTGCTCTCTCTTTTTATATACTTAAGACGTGCcactgccaaaaaaaaaggatacaaaatataaaatctgtAGTATTATATAAACTTGCCAGTACAGCTCCACAAACATCTAATAATGTTAAGTAAAAATGCTATATTCTGATTTGTAACATTTCCAACTGAATGCAACATACAATTGAGACTGAATAACGCAGATTTGATACTGGAATACACATCTTAAAAGCACTTTTGTTTGTCTTGGAACTGAGAAATAAGGCTGATTTGGGAGATTTAATTGAACCTCCTTTGACAGCTTCCTATAATCTTTGTCATATGAAACACCTCTGCCATCTCAGTAAAGGGTTTTGTTTAAACCAATCTTAACAGGGATCCTAACCCCTTGATTATCTTTGATTGGTGGCAGTTCAAATGATTGATTAGGACACCACATCAAAACTGTAAGAAGCTTTTAGCCAACTCTTCTGCATGCAAAGAATCCTGGTAGAGAGGGAGACGAGAACCGTCATTCCAACGCTGAAGTCACACTTCAACACAAAACTGCGAAAGAGCACGGTGATACAATTCTTCCTTAATTAGGAACACAATTAACATCTGGTCCTATGCCAATCCAGGCAACACTAAAATGCAAACCAACAAGCAAGTTTGCCATATTATATTCAGTCCGTGCTGGTTGGAAACCATTGGGAAATATGCCAAAAATCCAATCCAATGAAATATACACTAATGAACCTGCATGACAACTGAGAAGTGCCAATACCATTACTGCTTCACATCCACGATCTGCCTTACCTGGTTTACTGGTTTTGCGATTACTCTTCGGACGGGCGAGGGAATTCATGGAGTCAGAACATGTCATCTGGAAGTGCCTCTCTGGGTCCGTGTCTTCATATTAGTTAAATCACATTCAAGGTGGTTTTGAATTTCTGTTGAGCTGTATTCTGTATGACTACCTTGTTTTGGTTCTGCCAGTTCTTAACCTCCATGTACCTATTAGTACTGCACTTactcttaaaatatttttgtactaGTAGGTACAGAACAAACCGTGAAGGGatccaatttaaacaaaaaaaaaaaaaaaaagaaaaaaaaaatttatgAAAAAGATGTCTGCTTTTTGTTAAAAAGGTTTCACATGCAATCAATTGCTGCAATGTAAGATGACAGATTTTTATATTGGTTGATCCAAAGAGAAAAAGTTACAGCAAAACCTATTATTGTACAGTACATTGTACTTTTGACTTTTCATGTGTtatgttaaaat

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35192 lncRNA downstream 157 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 31153 40627777 ~ 40632764 (-) True G28095
TU35108 lncRNA downstream 375343 40278727 ~ 40288574 (-) False AMCG00008042
TU35109 lncRNA downstream 386270 40277163 ~ 40277647 (-) True G28036
TU35107 lncRNA downstream 390129 40268272 ~ 40273788 (-) True AMCG00008042
TU35228 lncRNA upstream 80444 40748306 ~ 40750443 (-) True G28139
TU35294 lncRNA upstream 315757 40983619 ~ 40984904 (-) True G28190
TU35308 lncRNA upstream 350382 41018244 ~ 41019422 (-) True G28203
TU35311 lncRNA upstream 375834 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 461276 41129138 ~ 41129628 (-) True G28241
AMCG00008044 mRNA downstream 248159 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008041 mRNA downstream 307170 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008043 mRNA downstream 365249 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008042 mRNA downstream 385011 40273552 ~ 40278906 (-) False AMCG00008042
AMCG00008040 mRNA downstream 437511 40221367 ~ 40226406 (-) True AMCG00008040
AMCG00008052 mRNA upstream 1808 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008055 mRNA upstream 87921 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008054 mRNA upstream 151987 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008056 mRNA upstream 179140 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008053 mRNA upstream 200791 40868653 ~ 40875437 (-) True AMCG00008053
TU34865 other downstream 1159325 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1572162 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1608238 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1614320 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2499375 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 348297 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 531627 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1179071 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2093142 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3750012 44417874 ~ 44418196 (-) True G28970

Expression Profile