RNA id: TU35228


Basic Information

Item Value
RNA id TU35228
length 2138
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G28139
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40748306 ~ 40750443 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaggcaAAAGACAATCTTATCCCCTTCTTTGGAAAGGTATTATTTGTTCACTGTTTaatttccacttctgtttttgtgtgcagCTATTGTATACAGTGCGTCTTGGAGACCACAAAGTATTTTAGCCATAATCGCAGCATTCTTACTGTACTAACACAAGAACGGCGGAGTACACGGCCGACTCGCCgagcattatttttttaaatcttgttcCTTTCTTCCTTCTTAGTGCAAgtggtctttatttttttgatttttttgtacTATGAAGAAGTCAAAGACATTTATTCTGTGAGTGTAAACATTCCAAACAAGGAAGAAGAAGCTATAAGCAACCAACCTTACGAGCATCAACAACCACACAACTTAAAAGGGTTGACCCAACGTTACACCTACGACAAAGCGCCCAGTGCTACTAATGCATTGTGGAGAACAGATGGATCACAAACCTCAGTATTCAGACCGAACAAGATTTTTGTTGAACACTTTGTTCTCGAGAAAAATCAATTTCTAATGGCAGTGCCCTGTGAAAGTTGGTGCAGCGGTGACTAGTATTGGATTGTTAAGTGTTGTCTTGATCACCTCATACTTGGGAAATGTGGCTAGAAACGAGTTCATACACTCTAGAGTAACACGGACggctttattaaaatgtcttgctCCTGCTTTAACAGACAGCAGGGGCCTAAGGAGAACTGCAAAACCAGTCCAGGCACTAATATAAGATTCTGAATATCGATTAACCAACACTTACCGACTGGAGCTGTGCTTGTAAGGTTTCTTGCTCACATACATATAGCGTCTGCTTCCATCAGATGTATATTTCAGCAAAAATAcctatctttttatttttctaaagggGTAGTGTACAGCTACAGTCAAATCAATATGGTTCCAACCatagtctgtttttttttttttatataatttggtggtgctttagatttttttttcagtttttttttattttttatttgttcgtATGTACTCGGAGCTGATGATTTTAGCTCTTTCCTATTTGTACCTAATACCAATGTGAAACTTTGTATTTTCCTTCTGATTTTGGACTCAGTGAAAGTGTGATGTTTACATGTACAgattttgcaatttattttttattttccccgtgttttaattttctgatACCCTGTACTTGGAGGGAAATCTTGAccatagtttaaaaataaataaaaataatacacacacacacacacacacacacacacagatgtatgAGAATGCAAATGGTTTTAAAAGTGGGAATAGTGTCCTAGACTTAACAACCCCCTCCGAATGACCAGCTCATTTACCGTGGAAACTTCAAACCGCAGTTATTCTATGGAAGCTCAAGTACAccatacattgtgtgtgtgtatatacacatacacacacatatatatatatatatacacacacacacatacatacaaaacataattcCTTCTGTGGAGATTAAGAAGCCGATTATTACCTTGATGTCCTTTAATCCTTTTGTTCTGGTTGGTAGTTTTAGATTCGTTTTTTTAAGTTGAGCCTTTAAAGGCGACACCCAGATCAGCCAGTCTTTTCTACGGCTCTAGTGTAGTTTTGTCATTTATAAGCCATTGCAATTTCAATTTGGGCTTCACTAGTCAAGTAATTGTAAcactataaaaaaagaaaaaaaaagaaaaaactcaggaaaaataaaaggaccCATTAGTCCTTTTTATAAACGAGTCTTATTTGAAATGGTCGATTTCCCTCTTTGATACTATATAAAGTTATAtcaaattattcttttttttttttatatatatatatttattgtgttataTAACAGtggatactttttttttccagtacgtgtggctaaatattttaattctttagAAAAGTgttgataaatatatatgtgaagcaactaaaaagataaaagaaaaaaaaaaaaaactttctgtTTGTTCAATGCAAAATAGCATGGGCAGTCCTCTTTTACCTTACATATcacttttattaatgaaataccAATGAGTTTAAATTAAGCTTTCCTCAGTGTGATGTTACTAATAGGTAAACACTGGTCTCAGAACACAAGATTGTGGAACAATTTCTCCTGAGCTGTATATCACAATGCTGAATatactaataaaacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35203 lncRNA downstream 80444 40663917 ~ 40667862 (-) True G28119
TU35192 lncRNA downstream 84546 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 115542 40627777 ~ 40632764 (-) True G28095
TU35108 lncRNA downstream 459732 40278727 ~ 40288574 (-) False AMCG00008042
TU35109 lncRNA downstream 470659 40277163 ~ 40277647 (-) True G28036
TU35294 lncRNA upstream 233176 40983619 ~ 40984904 (-) True G28190
TU35308 lncRNA upstream 267801 41018244 ~ 41019422 (-) True G28203
TU35311 lncRNA upstream 293253 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 378695 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 609701 41360144 ~ 41360468 (-) True G28308
AMCG00008052 mRNA downstream 70562 40669670 ~ 40677744 (-) True AMCG00008052
AMCG00008044 mRNA downstream 332548 40394078 ~ 40415758 (-) True AMCG00008044
AMCG00008041 mRNA downstream 391559 40328731 ~ 40356747 (-) True AMCG00008041
AMCG00008043 mRNA downstream 449638 40289650 ~ 40298668 (-) True AMCG00008043
AMCG00008042 mRNA downstream 469400 40273552 ~ 40278906 (-) False AMCG00008042
AMCG00008055 mRNA upstream 5340 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008054 mRNA upstream 69406 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008056 mRNA upstream 96559 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008053 mRNA upstream 118210 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008058 mRNA upstream 231453 40981896 ~ 40982690 (-) True AMCG00008058
TU34865 other downstream 1243714 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1656551 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1692627 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1698709 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2583764 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 265716 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 449046 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 1096490 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 2010561 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3667431 44417874 ~ 44418196 (-) True G28970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1586704 True 2040 lncRNA 0.41 2 NC_048580.1 53777322 ~ 53779419 (-)
eurasian perch (Perca fluviatilis) TU155984 True 1802 lncRNA 0.41 5 NC_053122.1 18171679 ~ 18174071 (+)
eurasian perch (Perca fluviatilis) TU61706 True 7323 lncRNA 0.42 2 NC_053116.1 769776 ~ 777170 (-)
striped catfish (Pangasianodon hypophthalmus) TU61706 True 773 lncRNA 0.41 1 NC_047597.1 24800517 ~ 24801289 (+)
striped catfish (Pangasianodon hypophthalmus) TU155984 False 2953 lncRNA 0.36 1 NC_047602.1 13351320 ~ 13354272 (-)