RNA id: TU35231


Basic Information

Item Value
RNA id TU35231
length 313
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G28141
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40758698 ~ 40759010 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGGGTCCATGCCCTCGGTGTCGTTGATCTTGTCGCTGTCCTCGTGGTCGTGGTCGTGCTCGTCATCGTCATCATCGTCGGCGGTGTGTGCACGGCTCACGGACAGGTCCTCGGGGCACACACTCACCTCGGTCTTCACCGAGTCGTAACTCCCAGAGCTGTACTGAGGggactgaggagagagagaaggtaaCGGAGAGCTTTCTTTGCCTTCTTTTCacccaggaaaaaaataaacattttttatacacCTAGGTTTCCATTTAGCCTCTCGCGAGctgaagaaaagagaagaggTTTCCAAGGACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35229 lncRNA upstream 2722 40751475 ~ 40755976 (+) True G28140
TU35194 lncRNA upstream 37007 40663972 ~ 40721691 (+) False AMCG00008051
TU35105 lncRNA upstream 481011 40277414 ~ 40277687 (+) True G28032
TU35021 lncRNA upstream 698493 40051890 ~ 40060205 (+) True G27973
TU35006 lncRNA upstream 754998 39957987 ~ 40003700 (+) True G27960
TU35233 lncRNA downstream 2256 40761266 ~ 40761633 (+) True G28143
TU35274 lncRNA downstream 218644 40977654 ~ 40978428 (+) True G28174
TU35273 lncRNA downstream 257357 41016367 ~ 41017248 (+) True G28173
TU35282 lncRNA downstream 259234 41018244 ~ 41019386 (+) True G28178
TU35343 lncRNA downstream 370126 41129136 ~ 41129628 (+) True G28234
AMCG00008050 mRNA upstream 13433 40724357 ~ 40745265 (+) True AMCG00008050
AMCG00008051 mRNA upstream 36953 40711479 ~ 40721745 (+) True AMCG00008051
AMCG00008049 mRNA upstream 48849 40698024 ~ 40709849 (+) True AMCG00008049
AMCG00008046 mRNA upstream 97652 40649143 ~ 40661046 (+) True AMCG00008046
AMCG00008048 mRNA upstream 111532 40632644 ~ 40647166 (+) True AMCG00008048
AMCG00008057 mRNA downstream 137606 40896616 ~ 40922814 (+) True AMCG00008057
AMCG00008061 mRNA downstream 171102 40930112 ~ 40948904 (+) True AMCG00008061
AMCG00008062 mRNA downstream 191202 40950212 ~ 40959551 (+) True AMCG00008062
AMCG00008059 mRNA downstream 204139 40963149 ~ 40975884 (+) True AMCG00008059
AMCG00008060 mRNA downstream 234711 40993721 ~ 41013873 (+) True AMCG00008060
TU35066 other upstream 511460 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 699312 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 923762 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1254321 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2049783 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 1233849 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 2346703 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 2387763 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2533586 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 4264138 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile