RNA id: TU35294


Basic Information

Item Value
RNA id TU35294
length 380
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G28190
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 40983619 ~ 40984904 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGTACATCTCTCTTCTGATAAGGAAGTGACAACCAAGTTTCGCTTTAACAAAGAGGCAGTTATAAACATTCAATTCCGATAGAAAACCTGCAAGAATGATTGAGGACCACCATCTAACCATATTTGCCAACATGCttggagttacagtcttcctgCTCATTATTCTCTACCATTATGTGGTCACCAATGCCCCGAGAAAGCTGAAACACGGTCAATATTCTTAATGTTTTCTATGCAGGCACGTGGGGTCCAGAAGTCACTTTACTGACAAAGCTGCCAACTTGAAAGATGCCCATCTGatgaaaatgacacaaaataagTTATTCTCTGTACAAGACATGttgtatatcattatatataaaaataaataaactgtttc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35228 lncRNA downstream 233176 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 315757 40663917 ~ 40667862 (-) True G28119
TU35192 lncRNA downstream 319859 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 350855 40627777 ~ 40632764 (-) True G28095
TU35108 lncRNA downstream 695045 40278727 ~ 40288574 (-) False AMCG00008042
TU35308 lncRNA upstream 33340 41018244 ~ 41019422 (-) True G28203
TU35311 lncRNA upstream 58792 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 144234 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 375240 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 379858 41364762 ~ 41366616 (-) True G28309
AMCG00008058 mRNA downstream 929 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008053 mRNA downstream 108182 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008056 mRNA downstream 134870 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008054 mRNA downstream 155103 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008055 mRNA downstream 214295 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008063 mRNA upstream 71222 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008066 mRNA upstream 102044 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008068 mRNA upstream 144012 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008069 mRNA upstream 214720 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008067 mRNA upstream 218004 41202908 ~ 41219672 (-) True AMCG00008067
TU34865 other downstream 1479027 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1891864 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1927940 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1934022 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2819077 38161286 ~ 38164542 (-) True G27522
TU35307 other upstream 31255 41016159 ~ 41017248 (-) True G28202
TU35381 other upstream 214585 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 862029 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1776100 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3432970 44417874 ~ 44418196 (-) True G28970

Expression Profile