RNA id: TU35307


Basic Information

Item Value
RNA id TU35307
length 1090
RNA type TUCP
GC content 0.45
exon number 1
gene id G28202
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41016159 ~ 41017248 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNNNttccagatgtgctgtccaagctcttctgaagaagcacaaagaaacgggcagtgtcgaggaccatagacgcagtggtcggccaacgaaacttactgcagcagatgaaagacacatcatgctcacttcccttcgcaatcggaagatgtccagcagtgccatcaactcagaattggcagaaaacagtgggaccctggtacaccatctactgtccggagaagtctggtcagaagcggccttcatggaagacttgcgggcaaaaagccatacctccgacgtggcaacaaggccaagccactcaactatgcatgaaaacacaggagcTGGGGTGctgaaaaatggcagcaggtgctctggactgattaGTCAAAATGTGAactatctggctgtagcagaaggcagtttattcactgaagggctggagagcggtacatgaatgagtgtctgcaggcaacagtgaagcatggtggaggttccttgcaagtttggggctgcatttctgcaaatggagttggggatttggtcagaattaatggtctcctcaatgctgagaagtacaagcagatacttatccatcatgcaataccatcagggagtcatctgattggccccaaatttattctgcagcatgacaacgaccccaacaGTCAACAGTCATTAAAAAGtcatcttcagtgtaaagaagaacaaggagtgctggaagtgatggtatggcccccacagagccctgatctcaacatcatcaagtctgtctgggattagggaagcaactgaggctgcctaaatccacagaagaaccgtggttagttctccaagatgtttgggtcaaccaacctgccgagttccttcaaacactgtgtgcaagtgtacctagaggaattgatgctgttttgaaggcaaagggtggtcacaccaaatatggatttgatgtagatttttcttctgttcactcactttgaatttagttaattgataaatataatcttttaatatgtctatttttgaaagcattcttactttacagcactACCCTAacccatagactacaatggggaaaacacaaggaaaacaggaatcctaaaatcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35294 lncRNA downstream 31255 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 265716 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 348297 40663917 ~ 40667862 (-) True G28119
TU35192 lncRNA downstream 352399 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 383395 40627777 ~ 40632764 (-) True G28095
TU35308 lncRNA upstream 996 41018244 ~ 41019422 (-) True G28203
TU35311 lncRNA upstream 26448 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 111890 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 342896 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 347514 41364762 ~ 41366616 (-) True G28309
AMCG00008058 mRNA downstream 33469 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008053 mRNA downstream 140722 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008056 mRNA downstream 167410 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008054 mRNA downstream 187643 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008055 mRNA downstream 246835 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008063 mRNA upstream 38878 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008066 mRNA upstream 69700 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008068 mRNA upstream 111668 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008069 mRNA upstream 182376 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008067 mRNA upstream 185660 41202908 ~ 41219672 (-) True AMCG00008067
TU34865 other downstream 1511567 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1924404 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1960480 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1966562 39047289 ~ 39049597 (-) False AMCG00007990
TU34421 other downstream 2851617 38161286 ~ 38164542 (-) True G27522
TU35381 other upstream 182241 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 829685 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1743756 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3400626 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 5033447 46050695 ~ 46054346 (-) True G29301

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU662040 True 1741 TUCP 0.36 1 NC_048571.1 17398793 ~ 17400533 (+)
eurasian perch (Perca fluviatilis) TU96793 True 1998 lncRNA 0.44 1 NC_053118.1 14144467 ~ 14146464 (-)