RNA id: TU35308


Basic Information

Item Value
RNA id TU35308
length 1179
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G28203
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41018244 ~ 41019422 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCagcagattattatttattgtggaaCCTTACAAGGTCCATAgctgttaaaaacataaatgcaatataatttaacatacacaccaattttattttaaatgctaccTCATTTCTAAATCCCCTGAAACATAAATGCACATCTTACAAAAGCACACAGGaagctgaaaaaagaaaaagacaaaatatatatatgacaagCAAAAGCATTCAGGGAAACTGAGATGGGTATACAGAGGAATTTCTATTGGAGATGCAGTCTTTTGAAGATATTGATTTGTGTATGCATCGCTCAGCTGCAATTCCATTGGGCTTCTTGGACAAAAGACTCTGGGAAaataacccccccacacacacccccccaaGCAGCAACCATACTGAACAAGCCAGAATACTACAGCTTCAGATTAACCCCTCACAGACCCAATGTTATGAGCTCCTGTGTAAACAGAATTCAGCTGAATGAACacgatacaaaaataaataagtaacattTTGCAAAAGCAGTAAAAAGGATGACATTCCTGTAGCATAAGCACAAAATATTGATCCTGGAAAATATGacgaaaacaaaggaaatgatGAGACATGACATTTCAGATTCCCCACGGGATGAGGttaagaataatattaatacaccAAATCACAGGGTCCCAGTACAGCCAACACTCCTCTGCGTACCAGTTTCGGAAGtgctaattttaaaattaattataaaaagcTTGTATGTTTACATGCAAGTTTATATGTCAAGGCACCAGTTTCTTCAAATGCTTTCTCCAAGAGCTCCATCTTGTGGCTTCCGACCAACAGTGCATATAAACCGAGGATCTGTTAATCTGACATTTTgacagaggtggaaagagtactaaaaaatcctactcaagAAGAAGTACTGTAACTGATGAAATgttactcaagtaaaagtaaaagtactggtaaAAAATAGCtacaagtaaaagtaaaaagcagCTCAtttacatagttacttttatcaaagcattgtcacatgatctccaagcaaacactaacacacacacacacacacacatattatatacagtactgtgcaaaagtcttaggcaggtgtgaaaaaatgctgtctatttttgaaaacattcttactttacatgttaatagattatatttatcaataaactaaatgcaaagtgagtgaacaga

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35294 lncRNA downstream 33340 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 267801 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 350382 40663917 ~ 40667862 (-) True G28119
TU35192 lncRNA downstream 354484 40659881 ~ 40663760 (-) True G28110
TU35176 lncRNA downstream 385480 40627777 ~ 40632764 (-) True G28095
TU35311 lncRNA upstream 24274 41043696 ~ 41044047 (-) True G28206
TU35353 lncRNA upstream 109716 41129138 ~ 41129628 (-) True G28241
TU35434 lncRNA upstream 340722 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 345340 41364762 ~ 41366616 (-) True G28309
TU35443 lncRNA upstream 386369 41405791 ~ 41412224 (-) True AMCG00008076
AMCG00008058 mRNA downstream 35554 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008053 mRNA downstream 142807 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008056 mRNA downstream 169495 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008054 mRNA downstream 189728 40819849 ~ 40828516 (-) True AMCG00008054
AMCG00008055 mRNA downstream 248920 40755783 ~ 40769324 (-) True AMCG00008055
AMCG00008063 mRNA upstream 36704 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008066 mRNA upstream 67526 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008068 mRNA upstream 109494 41128916 ~ 41189631 (-) True AMCG00008068
AMCG00008069 mRNA upstream 180202 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008067 mRNA upstream 183486 41202908 ~ 41219672 (-) True AMCG00008067
TU35307 other downstream 996 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1513652 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 1926489 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 1962565 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 1968647 39047289 ~ 39049597 (-) False AMCG00007990
TU35381 other upstream 180067 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 827511 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1741582 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3398452 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 5031273 46050695 ~ 46054346 (-) True G29301

Expression Profile