RNA id: TU35353


Basic Information

Item Value
RNA id TU35353
length 491
lncRNA type intronic
GC content 0.33
exon number 1
gene id G28241
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41129138 ~ 41129628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTTCTCCAACTGTTTTATACAGCGTAGCTCTACAAAGGCATTGTGGTTATGGATCATTAAAACTGTGAAAACTACATTTGTAAGTGTCAGTCcataaattatgtaaatcacAATCCTGTACAAAGACCATTGTTAATGTCACTGAAGGCAGAAAGACCTATAAACTGATAATGAACACTAATTTTTGTTACCCAAAAAAGGCAGTAAATCAGTGGAGCTGGAACTGCTCCATCACTAATTACTTTCACAAGAGCCACAGATGCACTTCCCAGGCCTCCATTCGCAcatgcttttgtattttaattgaattgtaattGTGTATTGCTTTTCTATTGCCTTTGGTATAATGGGATACATCTTATAAAAGGGGTAAGAAACActgttctatatatttttatttcaactataaataaaaatccccaaACTGTAGAGTACAAAGTTGttgtaaacctttttttaaatggcgttaaaataaaattgtgacaAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35311 lncRNA downstream 85091 41043696 ~ 41044047 (-) True G28206
TU35308 lncRNA downstream 109716 41018244 ~ 41019422 (-) True G28203
TU35294 lncRNA downstream 144234 40983619 ~ 40984904 (-) True G28190
TU35228 lncRNA downstream 378695 40748306 ~ 40750443 (-) True G28139
TU35203 lncRNA downstream 461276 40663917 ~ 40667862 (-) True G28119
TU35434 lncRNA upstream 230516 41360144 ~ 41360468 (-) True G28308
TU35435 lncRNA upstream 235134 41364762 ~ 41366616 (-) True G28309
TU35443 lncRNA upstream 276163 41405791 ~ 41412224 (-) True AMCG00008076
TU35456 lncRNA upstream 497733 41627361 ~ 41627752 (-) True G28325
TU35516 lncRNA upstream 678150 41807778 ~ 41812074 (-) True G28361
AMCG00008066 mRNA downstream 34133 41086948 ~ 41095005 (-) True AMCG00008066
AMCG00008063 mRNA downstream 50999 41056126 ~ 41078139 (-) True AMCG00008063
AMCG00008058 mRNA downstream 146448 40981896 ~ 40982690 (-) True AMCG00008058
AMCG00008053 mRNA downstream 253701 40868653 ~ 40875437 (-) True AMCG00008053
AMCG00008056 mRNA downstream 280389 40847002 ~ 40848749 (-) True AMCG00008056
AMCG00008069 mRNA upstream 69996 41199624 ~ 41201818 (-) False AMCG00008069
AMCG00008067 mRNA upstream 73280 41202908 ~ 41219672 (-) True AMCG00008067
AMCG00008072 mRNA upstream 90688 41220316 ~ 41229073 (-) True AMCG00008072
AMCG00008071 mRNA upstream 110528 41240156 ~ 41248162 (-) True AMCG00008071
AMCG00008074 mRNA upstream 180381 41310009 ~ 41310560 (-) True AMCG00008074
TU35307 other downstream 111890 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1624546 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2037383 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2073459 39054153 ~ 39055679 (-) True G27720
TU34684 other downstream 2079541 39047289 ~ 39049597 (-) False AMCG00007990
TU35381 other upstream 69861 41199489 ~ 41201825 (-) True AMCG00008069
TU35536 other upstream 717305 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1631376 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3288246 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4921067 46050695 ~ 46054346 (-) True G29301

Expression Profile