RNA id: TU35380


Basic Information

Item Value
RNA id TU35380
length 1455
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G28263
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41199453 ~ 41201854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGAGGGCAAAGCAAGTCTGCTACAACACTGTTTAACTTGGTAAGATGTTTTGGGCTCCTGAGGACCGTGTTATATCGGGGTACAGGTGAACGTCAATTTGTATCAACAAGAATCCAAGGTTTTCAATCAAGGTTTATCAGGATAGACTGAAGGTTTTCCTGACTGTCTAATTCTTGCAATGATTCagacaatttttattttcatgtttttttattgtacaaagaaaaaaacttcaaaaagaaaatcttcCATTTAGAAGTTCCTGAaacgaaaaaagaaaaaaaaaatctattagaAATAGTCATAATGATGTGCATTACTTGGTCATGCTGACTGCATTCAGTCTGTCCTACTGAACAGGTCTGGCTCAGCAGTGCATCTTAAACAGAATATAACCTTTAAAATCTAAACCAATAAAAGGGTCTACAAGCAGTTACATTACCCACCCACCACTACTTCTACTGCAATTTAAAACCTGCTTACTTTGCAACAATGCTGTCGTTTCTCGCGAGCCTCAGAATGGAGTCATCAGCTTCACCATTCTACGGATGGCTCCACAGATGGCGTAAGTCTTGAACTGCCCATTGAACCTGCCTGTGACTTTGTCAACCTGACGAGGGGAGAAAGACGGGGGAGAGTTATTTACATTCCAAAACAGGTGGAAACAAAAGCCCGATTTAAAAAAGTGACTGAATGAAAGTAGTGCATGTGAAAACTCACTTCAGCAATGTTGATCTGAATAGACGCATGGTCCTTAGCACCGATGATGCGGTTGCTGGCGACCACTTGCGGGGGACATAGAGGTCCACGAATTCACCGGCGTCGTTCtgcatattgatttattttcaggtaAACGTCACACGGTGACCTACAGGGAAAACGCACGGAATTGGTTTAATGTAACCCCAGCTATACGACTGTACACAGCTTTTCACAGGTCTCAGCCAAAATCCACCCTACACGTATCGCACAATACGCCCCGCTGACGAACAGGCCTAAGCATCTGCGATGTCCACCATCTCCATCGGGTGAAATAACCCATTCGCAGAAcattgtaaaagtaaaaactgcAGTCGAATAAAACTGAAGTAAGGATGTGAAGTCCCGACGCACACACTTCACAGCATCGGCCAGTAACGCGCCGCACGCCTGCACGACACATGTGCTGCGTTCACCCCGTCGCCGTTTATTCGTGACGGTATTCGGCAATAATcgcatattgtattgtttaaaggATACCTATATAACGGACGTCGGTTTGTTTCGGATTTATTATCAATAGATACACGTTATGTATGagctttattgtatttttcacagtttaAGCAAGAGCGGCTCTTTCTCTTACCTCTGCGCCGTATAATGGCTGACACGGAAAGGAAGCGCGTGGAGACAGGAAGTTGTCATAAGCCGAGAATTCATGCGAGCTGCTTCCGGGTCGCGCGTGTCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35343 lncRNA upstream 69825 41129136 ~ 41129628 (+) True G28234
TU35282 lncRNA upstream 180067 41018244 ~ 41019386 (+) True G28178
TU35273 lncRNA upstream 182205 41016367 ~ 41017248 (+) True G28173
TU35274 lncRNA upstream 221025 40977654 ~ 40978428 (+) True G28174
TU35233 lncRNA upstream 437820 40761266 ~ 40761633 (+) True G28143
TU35424 lncRNA downstream 162741 41364595 ~ 41366619 (+) True G28298
TU35425 lncRNA downstream 164872 41366726 ~ 41368640 (+) True G28299
TU35426 lncRNA downstream 169012 41370866 ~ 41371821 (+) True G28300
TU35427 lncRNA downstream 176197 41378051 ~ 41378293 (+) True G28301
TU35429 lncRNA downstream 186729 41388583 ~ 41388784 (+) True G28303
AMCG00008065 mRNA upstream 70579 41123903 ~ 41128874 (+) True AMCG00008065
AMCG00008064 mRNA upstream 80493 41111056 ~ 41118960 (+) True AMCG00008064
AMCG00008060 mRNA upstream 185580 40993721 ~ 41013873 (+) True AMCG00008060
AMCG00008059 mRNA upstream 223569 40963149 ~ 40975884 (+) True AMCG00008059
AMCG00008062 mRNA upstream 239902 40950212 ~ 40959551 (+) True AMCG00008062
AMCG00008070 mRNA downstream 148574 41350428 ~ 41356833 (+) True AMCG00008070
AMCG00008077 mRNA downstream 356566 41558420 ~ 41563189 (+) True AMCG00008077
AMCG00008081 mRNA downstream 568096 41769950 ~ 41789678 (+) True AMCG00008081
AMCG00008080 mRNA downstream 598395 41800249 ~ 41812742 (+) True AMCG00008080
AMCG00008083 mRNA downstream 619814 41821668 ~ 41821994 (+) True AMCG00008083
TU35066 other upstream 952215 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1140067 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1364517 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1695076 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2490538 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 791005 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1903859 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1944919 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 2090742 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3821294 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile