RNA id: TU35424


Basic Information

Item Value
RNA id TU35424
length 2005
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G28298
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41364595 ~ 41366619 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGAGAAGTCCTTGTCCTTTTATCTTAATATTCAAGTACCACAAGTCACCAATTTCCTACAAGCTGGTTTGCCTCATGACATTCTGAAGCAAAGAGCATCCTGAACAGCAGACATGattaacacacatttttatttaaaaaataaaacagtttagaCAATGTATCCACTGTACTTGGCTTCACAGGTCCACCCAGTCTAGGTcaataataaatcacagaagTTACTCTCAGCTCTTTGAAACATTCTGCAGGAGTCCTCAACACACCAACTGGAAAAGAATAGCAGCTATGAACGTTCTCAACACACCTGGGTTATTCTTAGACCTTGGCAacaaattaatagaaaacaaatcttGGTCCTGTATGTCATCCATGTATTTTCAAACAATTtgatttgtgtaaaaaaaaaaaaaaaaagtaataattattataataaataactgtcCATAAGTCCTTCAAAGACTGAAACTGGTCACATGACCATATTCTATGGTACCTGACTAATGTAACATGCTGATCCTTGTTAACAagactgttaaaaaacaaacaaaaaaaaacatcaaaatacacagcagggatggagaaatgaaaagaaaggaaCACAGATCCTAGGCTTCCCCTTCAAAATAAGTCCgaaaatattctgtttttaaaaaatgagaaaGAATGTACAAACACCATGTTTTGTTAAAGTTTTATACTGCTAATAACAAGTTCACAGTTTATAGAAATATGaaggttaatatatatatatatatatatatatcactcacctgacacattttcaaagcaccGTGATCTAGGAGGATTCAGCCCAGTTTCTAAGTGGAGGTGGGGGGTAGCAGTTGGGGGTGGCATAAGGCAAGGGTCAATGATCCTAAACACTCTGTGCCACTGAATTTGGCACCTCAGGCTTTAATTTACACCCTTTCACATCAATGTGAGGTATGCTGGAGTAACCTTgctaattttgtattgtatttagtaTAGTAAACTCGGAAAGGTGTTCAAATATCAAATCGGCgacaaatactgaaaaaaaaaaaaaaaatcctcttgcTTCCAATGTGGGAACATGAAAGCTGAACGTACATTTGGAAATGTActgtcacattttctttgtaatttttACGTTTGCTGATACAAAAACAGACTAAATAGTACCGGCCATCCAAACAACaatgaacaaaagaaagaaagaaaaagtgtagaTCATGAAACGCACAAGTATTGGTGTCTGAAGATCAATGGAGGGAAATGAACAGAACCCAACATCACTTGAGGAGATCATGTAATAATTTTGGCATATGATCAGCTTCCTAGACCAAAGAGGTCCTAGTAGAGCACACCACTGTTTTCCCATGACAGTGATTACACTGAATGTATTGTGATGACACACGTTGTGGAGTGACAATAATTTTTACTCATAACTAGAAGGTAACTGATTTAAACTGGTATCATcccacatttcaaatgtaatagaTGCAATAGTCCACTGttcaattattttagttttttttttttccattttgttctttcattacaaaaatacgcaaaaaagaaaataagggtTGCTAACAATTTCAGACCAAACAGATATACTGTATAGACCGTACATACTGGTTACAGACAATCACAGATCACCGTTCTATTTAAAGCCAAATTAAGTCAAACTGCACATCCCACCCCCTTGTTCCAGGGGAACGCCTTTCTTCTCCAAAAACCTCAGGGGCATCCGTTtcacttgtttttttccaagaCAAGTAAGTTATGCATCAGCTCATCTGTGAATGAAGTGACATTTGCATTCTAACCCAAAAGGCGGGAAAACAAGCAGCTGTATCGACAATTAGCAGTCTTATAGCAATCTTGAACACATCAGGTCTCTACTGGACATAAAGCCTTCTGCAAAACTGCAGCTTCTGCATTGCACATACTTGGCAGGCAATGTTAACTGCATATTATATGGCAACTGTAGCACTCACAACCAGTAAGAagtataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35380 lncRNA upstream 162741 41199453 ~ 41201854 (+) True G28263
TU35343 lncRNA upstream 234967 41129136 ~ 41129628 (+) True G28234
TU35282 lncRNA upstream 345209 41018244 ~ 41019386 (+) True G28178
TU35273 lncRNA upstream 347347 41016367 ~ 41017248 (+) True G28173
TU35274 lncRNA upstream 386167 40977654 ~ 40978428 (+) True G28174
TU35425 lncRNA downstream 107 41366726 ~ 41368640 (+) True G28299
TU35426 lncRNA downstream 4247 41370866 ~ 41371821 (+) True G28300
TU35427 lncRNA downstream 11432 41378051 ~ 41378293 (+) True G28301
TU35429 lncRNA downstream 21964 41388583 ~ 41388784 (+) True G28303
TU35458 lncRNA downstream 328735 41695354 ~ 41695708 (+) True G28327
AMCG00008070 mRNA upstream 7762 41350428 ~ 41356833 (+) True AMCG00008070
AMCG00008065 mRNA upstream 235721 41123903 ~ 41128874 (+) True AMCG00008065
AMCG00008064 mRNA upstream 245635 41111056 ~ 41118960 (+) True AMCG00008064
AMCG00008060 mRNA upstream 350722 40993721 ~ 41013873 (+) True AMCG00008060
AMCG00008059 mRNA upstream 388711 40963149 ~ 40975884 (+) True AMCG00008059
AMCG00008077 mRNA downstream 191801 41558420 ~ 41563189 (+) True AMCG00008077
AMCG00008081 mRNA downstream 403331 41769950 ~ 41789678 (+) True AMCG00008081
AMCG00008080 mRNA downstream 433630 41800249 ~ 41812742 (+) True AMCG00008080
AMCG00008083 mRNA downstream 455049 41821668 ~ 41821994 (+) True AMCG00008083
AMCG00008084 mRNA downstream 460121 41826740 ~ 41832892 (+) True AMCG00008084
TU35066 other upstream 1117357 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1305209 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 1529659 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 1860218 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 2655680 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 626240 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1739094 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1780154 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1925977 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3656529 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile