RNA id: TU35435


Basic Information

Item Value
RNA id TU35435
length 1835
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G28309
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41364762 ~ 41366616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atactTCTTACTGGTTGTGAGTGCTACAGTTGCCATATAATATGCAGTTAACATTGCCTGCCAAGTATGTGCAATGCAGAAGCTGCAGTTTTGCAGAAGGCTTTATGTCCAGTAGAGACCTGATGTGTTCAAGATTGCTATAAGACTGCTAATTGTCGATACAGCTGCTTGTTTTCCCGCCTTTTGGGTTAGAATGCAAATGTCACTTCATTCACAGATGAGCTGATGCATAACTTACTTGtcttggaaaaaaacaagtgaAACGGATGCCCCTGAGGTTTTTGGAGAAGAAAGGCGTTCCCCTGGAACAAGGGGGTGGGATGTGCAGTTTGACTTAATTTGGCTTTAAATAGAACGGTGATCTGTGATTGTCTGTAACCAGTATGTACGGTCTATACAGTATATCTGTTTGGTCTGAAATTGTTAGCAacccttattttcttttttgcgtatttttgtaatgaaagaacaaaatggaaaaaaaaaaaactaaaataattgaaCAGTGGACTATTGCAtctattacatttgaaatgtgggATGATACCAGTTTAAATCAGTTACCTTCTAGTTATGAGTAAAAATTATTGTCACTCCACAACGTGTGTCATCACAATACATTCAGTGTAATCACTGTCATGGGAAAACAGTGGTGTGCTCTACTAGGACCTCTTTGGTCTAGGAAGCTGATCATATGCCAAAATTATTACATGATCTCCTCAAGTGATGTTGGGTTCTGTTCATTTCCCTCCATTGATCTTCAGACACCAATACTTGTGCGTTTCATGAtctacactttttctttctttcttttgttcattGTTGTTTGGATGGCCGGTACTATTTAGTCTGTTTTTGTATCAGCAAACGTaaaaattacaaagaaaatgtgacagTACATTTCCAAATGTACGTTCAGCTTTCATGTTCCCACATTGGAAgcaagaggattttttttttttttttcagtatttgtcGCCGATTTGATATTTGAACACCTTTCCGAGTTTACTAtactaaatacaatacaaaattagcAAGGTTACTCCAGCATACCTCACATTGATGTGAAAGGGTGTAAATTAAAGCCTGAGGTGCCAAATTCAGTGGCACAGAGTGTTTAGGATCATTGACCCTTGCCTTATGCCACCCCCAACTGCTACCCCCCACCTCCACTTAGAAACTGGGCTGAATCCTCCTAGATCACggtgctttgaaaatgtgtcaggtgagtgatatatatatatatatatatatattaaccttCATATTTCTATAAACTGTGAACTTGTTATTAGCAGTATAAAACTTTAACAAAACATGGTGTTTGTACATTCtttctcattttttaaaaacagaatattttcGGACTTATTTTGAAGGGGAAGCCTAGGATCTGTGttcctttcttttcatttctccatccctgctgtgtattttgatgtttttttttgtttgttttttaacagtctTGTTAACAAGGATCAGCATGTTACATTAGTCAGGTACCATAGAATATGGTCATGTGACCAGTTTCAGTCTTTGAAGGACTTATGgacagttatttattataataattattactttttttttttttttttacacaaatcaAATTGTTTGAAAATACATGGATGACATACAGGACCaagatttgttttctattaatttgtTGCCAAGGTCTAAGAATAACCCAGGTGTGTTGAGAACGTTCATAGCTGCTATTCTTTTCCAGTTGGTGTGTTGAGGACTCCTGCAGAATGTTTCAAAGAGCTGAGAGTAActtctgtgatttattattgACCTAGACTGGGTGGACCTGTGAAGCCAAGTACAGT

Function

GO:

id name namespace
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35434 lncRNA downstream 4294 41360144 ~ 41360468 (-) True G28308
TU35353 lncRNA downstream 235134 41129138 ~ 41129628 (-) True G28241
TU35311 lncRNA downstream 320715 41043696 ~ 41044047 (-) True G28206
TU35308 lncRNA downstream 345340 41018244 ~ 41019422 (-) True G28203
TU35294 lncRNA downstream 379858 40983619 ~ 40984904 (-) True G28190
TU35443 lncRNA upstream 39175 41405791 ~ 41412224 (-) True AMCG00008076
TU35456 lncRNA upstream 260745 41627361 ~ 41627752 (-) True G28325
TU35516 lncRNA upstream 441162 41807778 ~ 41812074 (-) True G28361
TU35523 lncRNA upstream 459826 41826442 ~ 41826766 (-) True G28366
TU35534 lncRNA upstream 476186 41842802 ~ 41843152 (-) True G28377
AMCG00008073 mRNA downstream 25074 41335578 ~ 41339688 (-) True AMCG00008073
AMCG00008074 mRNA downstream 54202 41310009 ~ 41310560 (-) True AMCG00008074
AMCG00008071 mRNA downstream 116600 41240156 ~ 41248162 (-) True AMCG00008071
AMCG00008072 mRNA downstream 135689 41220316 ~ 41229073 (-) True AMCG00008072
AMCG00008067 mRNA downstream 145090 41202908 ~ 41219672 (-) True AMCG00008067
AMCG00008075 mRNA upstream 2072 41368688 ~ 41378417 (-) True AMCG00008075
AMCG00008076 mRNA upstream 44319 41410935 ~ 41411821 (-) False AMCG00008076
AMCG00008078 mRNA upstream 226038 41592654 ~ 41593613 (-) True AMCG00008078
AMCG00008079 mRNA upstream 227186 41593802 ~ 41758872 (-) True AMCG00008079
AMCG00008085 mRNA upstream 480592 41847208 ~ 41849954 (-) False AMCG00008085
TU35381 other downstream 162937 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 347514 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 1860170 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2273007 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2309083 39054153 ~ 39055679 (-) True G27720
TU35536 other upstream 480317 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 1394388 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 3051258 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4684079 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 5114330 46480946 ~ 46481898 (-) True G29361

Expression Profile