RNA id: TU35467


Basic Information

Item Value
RNA id TU35467
length 2329
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G28332
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41846992 ~ 41936214 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGATAGGCTGCTTAAGgctactttatttaaaaacacaaagatggAAAAGGCTCGTTCACAATAGCATGTTAGACGTGAACagaaaagtagtttttttttttttgtagttttgtttttttatttggcaagaaagttaaaaaaatctaaagcagcctttttaaaaaggtaaaaagggGCGCCCTCATCTCCTAGCGTGGTTCAGCCCGGCCCGGGACTCAGGACGAGCTCCCGGCCTCCGGCTTGCCCGGCTCTGCCGCCTCGCTGAGCCGGCGCTCCATCACTTCCTGAGCCAGCCCACAGGTCACCTTCCCATTGGTCATAGCTGGCTGGTTTGGTTTCCCAAAGAAGAAACTCGACCACCAGTGTCCAGGATCCTGCTTTGGCAAACCTGTAGAGAAACCTGGATGGTGTGGAATGACCTCCCCAGAGTACTCTGAGCTTCCACAGGAGCTGTTACTTGAGGTGGAACCTATGCGCCCTGAAAGAGAAGCATTTCATGAGGGACATGTGCCACAAGCAGTCAATACAGCTGAGCACCAATCCAGTTTAGCTCTGTGACTGTCATTTATCACAGGAATGATCATCTGCCAAGGCACTGTTTTAGGAGGTATACTTGCTTACTCCTGTAGTAGTCATGAGTTGCGATAAGCGAGCCACTTGATGGAATTGCAGCCATTCTTCCGTTCTTAGATGGAAACCCTGAAATTAAATGGGACGCTGTAAATGCACATCCTTACTGTACTGAAGTGGTGAACATGTTTCAAGTAGTGCAGACGTACAGCTCAGGCTAGCCAAGAGATGAAGACCAGCACCGAGGAGGATTTCCCCAAATTACAGGAACATTCGGTTAGAAACTGTACTTTTAACCTACATGTGTTGAAACCGCATCAGGGCATGTTGCAAAAGTATGCAGAGCAGGCATTCGCAGTTAAAGGACAGTGTGAGGTTACAGGAACAACTGGCGATCGGGTTCGGGTTCCACTCAAGACAGACGGGCCACAGGACTGCCAACTGCCAACGATTATGCAACGCCCACAAAAAGaacattatgatttaaaaagtgAAGCCAATTATAACCTCACTTGACCTACATACTAATAATGGCTtggattaaaaatgcatttaaactactTGAAGGAAAACCCTAAAGGCTAGAAGTACAGGTGACGTTTTAGTCTGAATTCTGCCTCATTATCCGTCGGAGCATCTGCTTCCATAAAGACTTAACAGCTTGAACGCTGGCTGGCTTTTAAGgttgttgggggtggggggggggggggggtgtgtgaaGGGTGACCAGTTGTTTGCAGTTTCCTTTACCtaaatggggggggggttacaaaACCACACTTAACTACACAAAGTTAACATGCCTTTAAGGGAAGCAAAATTAGCATACGTGCTACGTCACCAGATGGAAATGACTTACCTCTTAAAACGCACAACTAACTGCTCGCTGCCTGGGAAGTGACACGTCTGGGTATACTGCTGTGATGAATGGTGAAATTCATACTATATGGGACCAAGctgggaaaacaaatgcatacaaaacaattaagagGGGACTAGAATAGAAGTGCGTTTAAACCAGCCATCTTACACTCTGCAGTGGAAACAGTAACAGTGTGATCGTGGGCAGGGAGCATTACTGCTGGACAACAATGGAGGAAGAGCACAACATGCCTCTTGATTTTGTTGTATCGGTACTGGCTTAATGCAGGTCTCGTTTAGTCAACTAGTACGAGTCAAAACGATTTTCGGATTTATTCAAATGCCGTTTGACGAAGAAAACATGCATCAAAATACCGAGTTGTGTTGTTGTACCCCCTCCCTCCATCACAGTCGGCCACCTCAACCCCACCTTGTCTGTACGGTCCTTCATCGACAGATTACCACCCACCATCTGATCACTACATACATGCACTTCCATTCGGCGTCAGCGGAGTGAAACATGCCTGGCCCCATTCAGACAACGCAAAGGACGTGGCAAACATATAAAACCACCACAAAGCATGCAAACGGCCTCCATGACACCCCGCTCCTCCATTTTGCCAGCTAACCCCACTGCCAGCGCTACATACCCGATTCTCAATCCTGTGGTCGTGCAGATCTTGCACCCAAACAACAGTCAATACCTCAGGCGGGCAAGGCTCAGGAAAGTAAACGCTAGGCAACGGGGCCCAttggaaataataattttgggTAAAACCCTCCGTCCTAGACAATCACCAACTGCAACAGTCCGTCTGCGGCGAGAGCCTTCGCGTCGCTCTATATATACTCGGCCGTCGTGAGAGGTGACGTCACGCTTACGTTGGCGGAGGCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35460 lncRNA upstream 118559 41728212 ~ 41728433 (+) True G28329
TU35458 lncRNA upstream 151284 41695354 ~ 41695708 (+) True G28327
TU35429 lncRNA upstream 458208 41388583 ~ 41388784 (+) True G28303
TU35427 lncRNA upstream 468699 41378051 ~ 41378293 (+) True G28301
TU35426 lncRNA upstream 475171 41370866 ~ 41371821 (+) True G28300
TU35471 lncRNA downstream 75895 41925845 ~ 41936214 (+) True G28332
TU35554 lncRNA downstream 127309 41977259 ~ 41980084 (+) True G28394
TU35585 lncRNA downstream 256917 42106867 ~ 42110075 (+) True G28416
TU35590 lncRNA downstream 267971 42117921 ~ 42186382 (+) True G28421
TU35677 lncRNA downstream 582886 42432836 ~ 42437228 (+) False AMCG00008102
AMCG00008082 mRNA upstream 982 41833262 ~ 41846010 (+) True AMCG00008082
AMCG00008084 mRNA upstream 14100 41826740 ~ 41832892 (+) True AMCG00008084
AMCG00008083 mRNA upstream 24998 41821668 ~ 41821994 (+) True AMCG00008083
AMCG00008080 mRNA upstream 34250 41800249 ~ 41812742 (+) True AMCG00008080
AMCG00008081 mRNA upstream 57314 41769950 ~ 41789678 (+) True AMCG00008081
AMCG00008090 mRNA downstream 42939 41892889 ~ 41893875 (+) True AMCG00008090
AMCG00008088 mRNA downstream 58593 41908543 ~ 41915531 (+) True AMCG00008088
AMCG00008087 mRNA downstream 66756 41916706 ~ 41921311 (+) True AMCG00008087
AMCG00008093 mRNA downstream 194854 42044804 ~ 42055393 (+) True AMCG00008093
AMCG00008094 mRNA downstream 221799 42071749 ~ 42072173 (+) True AMCG00008094
TU35066 other upstream 1599754 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1787606 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2012056 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2342615 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 3138077 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 142909 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1255763 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1296823 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1442646 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3173198 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile