RNA id: TU35471


Basic Information

Item Value
RNA id TU35471
length 10347
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G28332
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41846992 ~ 41936214 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGCTTCAAAGTTTTAATTCAACAGCAAGGTGTATGTATCAAAATAACATTCTGCGCTTCTTCCTCACACTCTACAGGAGgagaatacaaaacataatacatttttttctttcatcaaaagtgcatttatatatatatatatatataaaaaaagcctatttTGAACTGGTAAAACTGCtgaaacacattaatatgtaaagttcttggaatgtttttttttttttccctttccttggTTAATGACACCCGCAAGAAGACATCTGTGTCGTTTCATATCTCAAAGACTGTTTCTCTATGGATCAACTAGCTCCGTCACAATGAGCAGGAAAGTCTCGAACCTGGACGATCGTCAGAAGGGCGAAATGATGGCAGTCCTTCTAAAAGTAGTCTCTTCTTTTCCCATGAATATGACATCAATTTAAGTTAATCAGTGACAGTTCAATCCCACTTCTGTTTTGATAAAACTGACGAGATGAGAGTTAATTTTGACATTGTCATGAGCAATAAAGTGGGACCAATATGGGATcattaataagaaatatatcGGTTTCAGGTGCTGTAGAACCAAGTTAGATTCTCATttttgcctttctttctttatacaTAAATAGGTATTTTCTGATGCCTGCATTTCTTTTAGCTTCTATTATAAAATGACTGATACCACCCTGGAGGTATTATTTGCATAAAAATGCTactgttttttaagaaaagacATTACAAAAAGCCTTCAGAGAGTTCAGAGTCAGATTCCCTGCTACTTGCCGGGTCTTGCGGGTTTCATTAAAtcaatttcagttttagttCCTGGGAAAAAGGATGTgacatgcatacattttgtttgtttatttttttttcacataataCTCAGAAGAgctacacatttcaaatgtttcaacatgttacaaacaaaacagacatggaaagaaaaaaataaaatacattcattttgtttaccAGAAAGTGAGAATTGCAAAGTCCAGATTAATGCAAAGAACGCAGGTAAAAAAGCCCTTTAACTTTAAATCAGTCCCAAAGAATGTATCCTGACTGATGCATTtgtaaaacatctaaaaatacaggtttttggaattaaacaaaatatggaaaattATATATCAGATGGATTCAATTAATATCTATCCTAGAAGTTCAAAACATCTAAGGTTCTTTAAGAAAGTGAACGGCAATGTATTCTAGATCTAGTTGTTATGATGTGATTTTTCATACAATGttggaaataaaagcatttctgcacaccaatttatatatttttagggaAATGCATATCAACTCtagatattgttattttgtattattgttgttgttttaagagTGGCTTTAATATTGCTTTAGGAAATTCTGTCCAGCTCCAAATAGCTGTATTTCAGTATGCTTCAAAAACAGTCGACTGTGATACTTCAAGGCACCATTGTAATCAAAGACATAAGTAGTgttaacatacattttgttttttgccatttgttttccctcagactttgaaaaatgaaaaacaaaagacgaCACTTAAATACTGTTAGATTCACATTAAACGTTGTGGTTTGGATTCCAGCCCCTACAGGCCCTCACTCCCACAGCACCGGATTGCAAAAACTGCTAAAGCTGCACATGTGATTTCATTTACACAGTAAAAGTGCTGAGGCAGGGAGCCACCCGTACCTGTGTGGTTCATTCTAGACTCAACCACCTTCAGACCAAGCGTCAGAGCTGTGTCATTGACCGGCGTGTGGGAGAACAACCCTCTCTTTCCCTCGCAGGCCGTGAAGCTCCGTCTGAGGTCTTTCAACACAGCTTCTAAAGGATGGCTTTGTAGAACTTGCCAAATCCACCTTATGATAGCAATGAAGTCACATTCAAATCTATCGAAGCTGAGCTGCCCACGTTAGGAAATAACGCAACTGATTTGGGGCTTTTACTTTGCCGCGTTGTCTTTTGTAAGTGATTCACACGATCATGAACAGCCAGTTTTGACTAAAAAACTAGAAGAAAACGCTATTTTTGAAAAAGATCCCATTATAGTCAGGTTTCCATCAAGCCTTTTGTTGTGATAAAAGTTCTGCCGAATAAAATAACTTTACGACAGGCATGATGGAAACAGCAAAAGTTGATTGAATGTCGGAAACATCGATCAAATGTTTTTACGTTTGACAGAGGTGGATTTTTATACGTCAATGTAGTCTGTTACGCAACAAACGCCAGTGGAAACAGGTTCGTCCGACGACTAAGTTTGTGTTAATGTGAAAAAAGTGCTTTTGCaggaaattacttttaaatatttaaatttttacattttttatttgctacAAGTCAGTTGGATGGAAACGCATATTGGTTTGGAAAATGCACATATCATTTTTATGCGGACTTAAGAATTTTCGCACAAGGTAAGTTCGAGAAGTGGATGGAAACATAGCTTATGATGATCACATTGTAGGCATCAACTTTTTTCAAGagttctttttttatgttctgtCCCTACTGCAGAGCATCTAGaataagtttttgttttctaaacctTTTTTCTACACTTATTTTGTGGTGATCAGAAAATATTTCACGTTTGTACTTCATATAGGCCCAGTGTTTGAACAGAATCTTAAATTACTACCATTGAATATATAACATCAGATTAAACTTGTTGGCATTATAACATTTCAACTGAAATCAACAGAGGATATCTGACAAAAGAAAATTGCATGTGTAACACCACTTATGATCTCTTAGTACAGATCTTCACATAGACATTATAGAAAAATATGACAGATCAGtttgaaataacaaaacaatgttttcttctttttttgtctttaaagcAGATTGcatgggaaaaaacaaacaaacatagaaacgcacacacagatacacaaaactTTGGTATAAATTGCTGTTCTTCAAATACTGATTAAAACCAACCACTTGAAAAATTGAATAGTATTCCGGTTGTTGGCATTCTTTGTACAGAGTTTGtcaaaattatatacaatatccCCATCTCATATAAAGTCAATTTAAGCTTACCCTTTCTTCTAAATTGATATAAAACATTGGCATTGATACAAAACAGCTGAAtagaacaaaaatgttaaaagtcaATCTAGTGAcaatttatgttaaaaatattaaaactggtGATGTTAACAGACTCATTTCCATAAAGAATAAGTCTACACTAAACTGTACTTGAATAACAGTACGCTAAAGCATCTTGCCATACGACTACACTGACGCAGCTGTGCTACAAGCTAAGGTTCACTTTTGCTTAGGTCTGCCATCTGAAATTGTAATGTTAAACCAGTCCCTAAAATCATTTCAATAAGGATATATCCCTTTTATATCAATTAAACACCTGTTTGCAGTTATGCAGCGCTTATAGCATGATTGAGCAGAAAaaatatggatttatttattaactaatCACTAAATTGACCTGAGTTTTGGCCGGGTGGCAAAAACCTAAATCTTGATTATTCTGCAACATGTTTGGCCGAAGCAAACCTTAACTATATTTAGACCTCAGAGTTGTGTACAACAGAGATACAGGCCAAATCCTAAACAGTCAGGTGAGTTTATAACTCAATATAATTCATTCAACTTGAGATCTTTTACCAGAAGTAGTGCCGGACGTGCCAACTTCTAGTTAGACTTAATAAAACAAGACACATCACGATTACAAAGAAAGAAGTCAGTTCATCTGAGGCAATGCTCAGTGTAACACCGACTGcaaaaaagcacaacacaatgacaaaacacaaaaaaatgacagaaaaagcaCAAATTTGAGAGTCCTGTTCTCATGAGGAgctgccataaaaaaaaaagctggttCTTTTACACCTTATTGGTTGGCTGCCGTCTTGGATTCAACGACAGCAACAACATTCAAAAACTGACATTTACTTTTTCTGCACATTGCTTGGGTTCGGTTAGCTTAACATCCTGGTTTATGCAGGATTGTGGAAACAGCGATCCACAGCCTGCTTGCTCACTGCTCAAGCAATTATAGtcaaacaaactttaaaaacacagaggGGAACCCAACAGGGATGCCACAGATCGAAAAGGAGAGAATGCTGCTAGGAATGTGCGCAGAGGAGGATTAAACGGAGTCTTCTGGGAGCAGCCTGAGGTCTTTGCGGCAGACATAAGTGCAAAGGGCTGAGAGTCGGGATTCTCAGGTATTGGATTCTGGGGTCTGTCAAACATTATGCAAATCTCAATTCATTGCCAATACCGTTTGCCGGTAAGGTGAAACAAACTTGGTCAAATCGTGACATCATTCAAAGATGCTGAACTGAATCGAACAGCAAGTCTTTTGACTCATCTTGTCATCATTTTAGCTGTACTGTGCAGTTTTATGCAGTTGACATCATATGACAACTGTACGTACTGTAACCACGGCTGTCAGATACACTGAAGACTGCTCCGGCACACTCCTAAGACCAGCTTCACAGAAACAATATCGGAGATAGGCTTTTTACATTCATCAAAATCATTTCTTTCGTTTGTGTTCGTCTTCTAAAGATAATATACATTGAATATTTACATGGTTGTCTTCACTAGGGCTGTtatcttttctcctttttttataGAAATCTGCAACAATCACCCAAGCAATgcctattaaaacaaaaaccaagattcaaattttatattacaaaaaaaaagaaaacaatggttTCCGATACGTATTGTACTTTCGAAAATCCAAAACTGTACATATAATGATCGTTAATCGTCAGTGCACCCATTTCAAGGTCTTCGATTCCCGCCATTGGAACAGATTGGGACGATGTTGACAGTCAACCTGAGAAGTTCTACATGATCACCGCTCAGCCGTGAATGTGCGGACAGAATCGGAGTCACTCTGGTTTAGTCTCATTCACATTACATGGTCGTGACTGCGTCTGCAATGTCAGCCGCAATGTCAGCCACAGGGAGGAATTAAAGGAAGGCAACGGCCGACTTGCTAGTTAACACAGCCAGTGTCTGACAGATTGCTAACCTGATGACTTCGTGCAGCCAGAGAGGGGAAGGTGCTTGAGTGAAAATTGCCACAGAGTCTGACAGTTAGGATTAGCAAGACCAGAAGATTACTAAAGAGCCAGGAAAGTGTCCGTGTTACAGCAACTGAACAGCTGTATGCAAAATCAAATGCAAGAATTATTATTCAGGtcttttaaaaaggtaaaatgtCTTTCAGATCTGCCGCTGtccaattaataataaataacatgattGAATCTCATTAAAAGGTGACTGGTAGATGgctgtttatattttgttttctatattccTAAGATAATGTCAAGTCTACTTTTGCCTACTGTTCTGAGGCACTTTCACGGCTGATTCTTCCAAAGAGTAACAGAAACGTTTGTTGGTTTCAAAGCCCGTTCCATTTTTGATCGGGAACCCAAAAATAAGACCCCCGTTTGTGCCAAAAGCTTATTAACTGTAACTGGACCCACTTATCTGTTCtcctgcaaaaacacaaaacaaaacaaaacacaaggcaGGCAGTGACGATTGAACGACTCTCACGTTAACATCTTCAAAATTCTgcttataaaaaaaatccacataaaaatatatctttgtgCAGTACAAGTTAGTGCAATTCAATGAGGTTCACTTTACCCATTGGCACTCAATGAAGTTTCCACCCTAGAATAGTGCTCTTCTCTCTAGAACTGCTAATAAGAACACAGCTTTGAACTGTCCGTACAAAGAGTGCGTAGGAAGTGAAACTGAATAACGCAGGAAAGAGCTCGAGCTGAGCAGAGAAGATAGTTTTATCATACGGGCTTAAACGGTATCCGCTTCTCGGTGCAGAAAAGCTGCAGGTCAGCCACAAACCTCAGGTGGTCTTGATGTGCCAACAAGTAACACTGAGAACTTGTTTCTAATGCTGGGGTATCACAAAACATTGCTGATCAGACGGGCTTCTGTCAGGACATCTTTATAGGAACAGTTCAAATCAGTGTTCGTGGTGTATTGACAGGCAGCACTGTATATCATTTCTCAGATTCCCCAAAATCTGCAACTTGGATATACTGTATGAATGTACATATTTCatatacaaaagaaaatccaaTAGTAAGAGCTGAGAGTATATAAATCAATGAAGCATGAAGCCAAATAAAACTACTAAACGTACGAGCCCACTTTTATGCAACTGTGTTGTCTTATTGTCAGTCATATTGACTGAGACTCCAGTCCGAGTTAACTTTATGGGAAGCAAATAACCCCTTCAAAATTTATACAAATAAgtgtgggtatgtgtgtgtgtgtgttttagacaTGGTTCCTGAAATAAGGAATGCAAAAATACTggtttttaaaagctttcagaaaataaatccctttCCTTTAACTGAAAATTGTTTACCCGATGAATGCATCTCCGAAAGGTTAGCAGTCCATCTCAACATCAATTCAAGCCAATTCAACGTCAAGCAAAAAACATATACAGGACTACTAAAATAACACTTGTGGaaagaaataaagtaattacTAACTTAATACTGCATAgcttagaaagaaaaacatcagcgttactaataaacaaacaaaacaaatattttatcaaaAATATAGTGCGATTTTCATAGCTTCATAAGATCAAAGTATACTTGACGTACTTAACGGCTTATTTGGAGATGAACCAAATCATCTAATGCAGAATCTTATGAATATACTGAGCTGCAATGGAAATTAAATCTATTGTAGTGGAGCAGTTTCTACACATGCGTAAAGCAGACCTGACGTGTATTATTTGCTTCCCAAAAAGACGACGTTTGATTCAGGAAAACTGACGAAAAAAGGAGAAGATTGTAAAAGCTTGATACTGTGATACAGATAAGtgtgattgcatttttttaaatgacagctgGAAAGTTAAACTTAAAATTGAATAGTTCCAAATGATGTCAAGAGTTAAAGTCTatacatttcaaactaaaaaGTATAAttgaaaaaagtttaaaaccaGTAAGATGTGtaaaattagaaaatacaaaaccagTACATTACAAAGTGTGTGAATTAGTTTTCTTTACTGTGAGAAGCTTTGCAAAATGTTCAcctaaaaaagaacaaacaatgCTGCCCAAGCCAATgcgttttttttagtttttttttttttttacatttttgttttgtgatattttttagtttttttcgtAACGTGTTTCGTAATGTTTGTCCTTTAGCTTTAGCAAAAGCCATAAGATGTCAGAGAGAAGTCTCTGTCGGGTCCGCGCACCCGGATCCTGGAAGAACACGCTTTTCGCTTTCGCAGACAGATGCGTCGTGCGGCGGCGCTTCGTTTTTGAGTGAACTACACCAGATTGCAGAGGCAGCCTGTCTTAGAGTACGAACTTCAGAAAGAGCCGGGTTCAGTCAATAAATCGCTGGCAGGCCTTTTTCCAGCGGCATGCAGTGCACCACATGTCTTTCTTCTCCATGCCGTACACCTTCCGGCACTTCTTTGCTTCCCCACGGGGCTTCCTAGAAAGAGAAGCCGCTGTCAGAGTGGGCAGAGAAGGGTGGATACCAAGCAGCAATCCAAGAGTTGGTGGGTGAGGATAGGTTTTCTGCTTCACACACGTGAACACCATTGGCTGGAGACGAACGGGTATTCTCTTGATCTGGGGAGTGTATACTTTAGACTCCGGTAAATCCTACATTTCCTTATCATTGCTGGCCTCTCACCTTTGGAGGTCAAGGTTAAAACTGGGGGGTGGTGAGAAATGGACAAATGTCTGCCAGCATTTACTTCGACATCTTGAGAAAATGTTACGGTGCTTCAGTTATGGAGTTTATAACTGCAACCTCAATGGCAAAGCGACAGGGTCTTGGCATGTCAAGGGATTTTGGGACAGCTGAAGCTCAAGTGGCTATTTTCGGTGAGGGCAGAAATACAGGTTTGGTGGTgccaattaaaacacatttttagaatAAATGTATATCCCCCCCTGCCAACCGACGACATCCTGTTTTCGTTGACTGTAACGAGGGTTTTCAAGGGCTGTCTAAGAGGAAAACCTGAAACCCGAAATAAGCTCCCCTCCGACAACCGCTGTACTGTTTATTGTGACGTAGACTAGTATTGTATCAGTGGGGATGTGGGGAAAAGGGCTCGCCTTCCACTGAGGGGAGGCGAGGGAGTGTGTGAAAAGCCATTCTTTGCCCCGTAACAACTGTTTTCGGTGCGCGCTCTTCCTAAATGGCCAAGTGCCATCCTTTGTTTTACAGCTCACTGACAGGCTTGAGTTTGTATTGCCCAAGCCCAAGTAAGgaattttttttaagcaagatAATTAAAGAGCTGCAATACATTctagttttgcttttgttgccCCATAATCGTGATTAACGCAGGCTTGACAAGGGCCTGTATGGCATTCTGGCATGAACCTCGTTTGTAAACACTGCAGTACACAGTTTTTGTTTAGTATGGTGAATGCAGCAGCACCCTATTCCATTTCCTTTAATTAACAGAGAAGTGTAGATGCCATTACCCACCAGGTATGGGCCAGTAACCAAATCCCAAgtttttcaaaagaaataaaGTGTACAGGCTGGGCTGTGTTACCTAGTTCCTGTGGAGGACTTGGGTGTGACGGGGGGAGCGGTGTGTGTCTTGGCAATAGTAGCATGCTGAAGAGGCTGCCGTTTCTCCCCGGTGCTCACCGTGCGAATGTGAGTTACCGGGCCCTATAAGGAACAAGAGGTCTGAGTCACTGACCAGTAAACAACTTCATGTGAGGTAAAAACCCAATATCACTAAACAGTCACAGAAATATGTTGTACTCTACAAGTGAATAAAACAATGCTTATAGAAATAATCACAGATAGTAAAGTCTGAAAAACTCGGCCCActaagtttgttttttcccttatGGAAATAGacatagaaaaagaaaataaacagaagatcTATTTATAAAAAGAATACATCCTGGTTTTAACCTACAGCTAATCATTTACCAAGAGATTGAGAACAAAGTTAGCCACTGTTTTAGATTAGTACTTTCTGGCATGAGCACTCGATCAACAGGAAACAGGAACTCGTGCAAAAGCATGCTTCACATGTCCACCGCTCTCACAGAGAACACAAACGCGTTCTGGATGAGCAAATATTCTCTCTATTTCTCATAGCTGCTCATGTATAACAAGAGCTAGGAATAGAGAGGAGAGCACTGGCTGGAGCCGCcctttattttccttctgcaTGACTTACTCTTTACGTTTAGTGTCAGTGAGTAAACAGATACAAAGCGAAAAAGGAAACTGCTGCTGTTTCAGAATGGTTGAGGCAAAATCGCTATTTGCATTCATATACACTGGAAATTGGTTTGGCGCTAGGCTTAAGCTAACATGATTTGAGCGAACGTCTACTATTTCAATACACACAAGAGACAGAAACAAAAGAGCTATCAAGAGTGTGCCTGCTCACCGGTGACCCTTTAAAAATGACGGGAGGGGACTGCCAGGAAATACTGATCCCATTCTCACTTGGTATGAACTTTGAAGATACAGGAATGCTCACAGGAGCAGTTGCCTGAAAAACACAGCGCAGTTAAGTGTGGAAATACTGCACTGTGCAGGAAACGTGCCATGCCAAGCCACATACTGGACAGCACAAACGCAAACGCACTTACCGTTACGGTTTAGAAAAGTTATTTCCTTCAAAATGCAATGCAGAAAGTCCTGGTTAGCAAGATCCCTTTGCCAACAGTATATTTTGGAAATGGCTAATTCCTTTTCTTTATGTTAAATTACTGTACAACTAAAAATGATTCTTTAACATTAATTCAACCAACAGGAgagaatgataaaaaaaaaaaaaaacattagacaCTGGATGGGCTAAGAAAAACTACAAACTAGaccaaaaacatgacaaattagACTGAACCAAAGCAACAGGCCGCTTTGTTTAGAAGCGCTGAAGGACAGAGCACACATTCGACGGGAGAGAGCAGCGAAAGCCTGGCCAATAAGGTCGGGTGGGGGTGAAAGGTCAGGGCGTTGGTACCTGGTAGGCGTGGTCAGTGCGGATATGGCAGAGCGTGGAGGGTGCCGATTGGCTCAGCGGCGTCTGGGGCCGTCCTCGCCGGGGGCTGATTAGTGCAGGCTCCGAGTGGGGCAGCTCGGGCGGCGGGAAGACGGGCGGGGGGCCGATGGTGGTGGGCGAGGTGGGCGTCAGGCTGGAGAGCCCCTCCGACAGCGTGTCCATGTTCACCTCGATCTCCGAGTAGTAGAAGTCCTCCTCTCCGTCGCTGTAGTCCGAGTCTCCATTGCGCCTGGCGGGAGAGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35472 lncRNA upstream 60819 41846992 ~ 41865026 (+) False G28332
TU35467 lncRNA upstream 75895 41846992 ~ 41849950 (+) False G28332
TU35460 lncRNA upstream 197412 41728212 ~ 41728433 (+) True G28329
TU35458 lncRNA upstream 230137 41695354 ~ 41695708 (+) True G28327
TU35429 lncRNA upstream 537061 41388583 ~ 41388784 (+) True G28303
TU35554 lncRNA downstream 41045 41977259 ~ 41980084 (+) True G28394
TU35585 lncRNA downstream 170653 42106867 ~ 42110075 (+) True G28416
TU35590 lncRNA downstream 181707 42117921 ~ 42186382 (+) True G28421
TU35677 lncRNA downstream 496622 42432836 ~ 42437228 (+) False AMCG00008102
TU35705 lncRNA downstream 564460 42500674 ~ 42500981 (+) True G28511
AMCG00008087 mRNA upstream 4534 41916706 ~ 41921311 (+) True AMCG00008087
AMCG00008088 mRNA upstream 10314 41908543 ~ 41915531 (+) True AMCG00008088
AMCG00008090 mRNA upstream 31970 41892889 ~ 41893875 (+) True AMCG00008090
AMCG00008082 mRNA upstream 79835 41833262 ~ 41846010 (+) True AMCG00008082
AMCG00008084 mRNA upstream 92953 41826740 ~ 41832892 (+) True AMCG00008084
AMCG00008093 mRNA downstream 108590 42044804 ~ 42055393 (+) True AMCG00008093
AMCG00008094 mRNA downstream 135535 42071749 ~ 42072173 (+) True AMCG00008094
AMCG00008092 mRNA downstream 155343 42091557 ~ 42100380 (+) True AMCG00008092
AMCG00008097 mRNA downstream 276158 42212372 ~ 42213085 (+) True AMCG00008097
AMCG00008098 mRNA downstream 343555 42279769 ~ 42289436 (+) True AMCG00008098
TU35066 other upstream 1678607 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1866459 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2090909 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2421468 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 3216930 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 56645 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1169499 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1210559 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1356382 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3086934 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile