RNA id: TU35535


Basic Information

Item Value
RNA id TU35535
length 1032
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G28378
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41844956 ~ 41845987 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGATAACAATTTGGTTTGGTACAGGACTTCAGATTAAACTACAGCAGGTAACAACTGAAACCAAAAGGCTCTGAAAGATCTATAAACTAGAACAACATTTCATGATGCAATTACACTTAGACTTGCACATGGTTACATCAGTAACTTCACAACATAAATCAGTAAGCAGATGAATATTTACAACTATTAACACGAGTAACAATGGGGTTTCATTCAAGGACTATTTGCACATTTGTGAAGGAGACCACGTCACTTAGTTTTAGGATCAAAAAGGACAACATTATGAAAAGATTTTCCAGTCACCGTGAACAACACTAGTCAGACCATTGCATTTGCTGtttgtgtaacatttaatttgttggtGTGAGCTGCAGCTACAACTTtctttaaaccaaacaaaagtggcaagtttccaaattaaaatgtttgttttgtgccaCTAACAAGCTTAAATGGGGCACGTCTAAATGTCAAATCAGCCAAGCTATTGTGCCAAGTTTCCATTTCATGACATGCACGGCTGCTTTGTGCTGACTGGACACTTCTGTTCCAACACACATCTGTGGAGCATAAATCCTCTGCGACCTGTAGCTTTGTGATTGGACATCTAATGCAAACAGCCGTGCTCTGAAAGGAAATCAATCTGCCACATTCTGCCTGTGCACAGATATGggccttttttaaaaaaaaaacctgtgtaAACAGTTGGGAGATTGGACTGCTGCCCCTTtctgaaagacaaaaacatctATCCTTGAACAACTCTGTCTCTCTTGAGATGTACACTCCTGCtaggcaaaaaagaaaataaatgtctttgttttgctgcTGAAGTGCTGAGACACCTCACTTTACAGTAACTGAGCAGACAATCTTTCTCTGCGGCTTCCCCCAGGTAGATTTCTGTAGTTGCTAGTTAGTTACACCTACTTTGTTACACCTTCTGCTGGGCTGGGTGGTTGGTGTGCGACGGCGTGCGCTCTGGTGTGTCCTAACAGCACACTCGTGCACCAGTCCATCACGGGAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35534 lncRNA downstream 1804 41842802 ~ 41843152 (-) True G28377
TU35523 lncRNA downstream 18190 41826442 ~ 41826766 (-) True G28366
TU35516 lncRNA downstream 32882 41807778 ~ 41812074 (-) True G28361
TU35456 lncRNA downstream 217204 41627361 ~ 41627752 (-) True G28325
TU35443 lncRNA downstream 432732 41405791 ~ 41412224 (-) True AMCG00008076
TU35570 lncRNA upstream 237487 42083474 ~ 42084457 (-) False AMCG00008095
TU35575 lncRNA upstream 245470 42091457 ~ 42092198 (-) True G28410
TU35621 lncRNA upstream 437972 42283959 ~ 42290245 (-) True G28446
TU35634 lncRNA upstream 455290 42301277 ~ 42302097 (-) True G28456
TU35673 lncRNA upstream 514921 42360908 ~ 42401074 (-) False AMCG00008104
AMCG00008079 mRNA downstream 86084 41593802 ~ 41758872 (-) True AMCG00008079
AMCG00008078 mRNA downstream 251343 41592654 ~ 41593613 (-) True AMCG00008078
AMCG00008076 mRNA downstream 433135 41410935 ~ 41411821 (-) False AMCG00008076
AMCG00008075 mRNA downstream 466539 41368688 ~ 41378417 (-) True AMCG00008075
AMCG00008073 mRNA downstream 505268 41335578 ~ 41339688 (-) True AMCG00008073
AMCG00008085 mRNA upstream 1221 41847208 ~ 41849954 (-) False AMCG00008085
AMCG00008086 mRNA upstream 5221 41851208 ~ 41870711 (-) True AMCG00008086
AMCG00008089 mRNA upstream 79858 41925845 ~ 41943588 (-) True AMCG00008089
AMCG00008091 mRNA upstream 131700 41977687 ~ 41997684 (-) True AMCG00008091
AMCG00008095 mRNA upstream 238269 42084256 ~ 42089493 (-) True AMCG00008095
TU35381 other downstream 643131 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 827708 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 2340364 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 2753201 39088922 ~ 39091755 (-) False AMCG00007993
TU34686 other downstream 2789277 39054153 ~ 39055679 (-) True G27720
TU35536 other upstream 946 41846933 ~ 41849890 (-) True AMCG00008085
TU35782 other upstream 915017 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 2571887 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 4204708 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 4634959 46480946 ~ 46481898 (-) True G29361

Expression Profile