RNA id: TU35554


Basic Information

Item Value
RNA id TU35554
length 2826
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G28394
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41977259 ~ 41980084 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaggtgagtgtataccatCATTTAAACAATGATAACCAACTGCAACTCCTCACAAGATAAGCCTtcttaaacatttaacacaactgAAGGAATAAAGAGAGATTCAGCTTTTTTCAGGCAACATCAAAGACATATTctgaattataataaatatattttgcaatacCAAATAATATGAAAGCAGGCATAACAACAGGTAGATTCAGTTCAATGTCACAACTTCCAACACTAATGCCACGTTTGTTTTCCTCTTAGTGTGCGAGGAATGCGTCTATATTTCTTGTTCTTCATGAGGTTGTTTCGGAGACTTTTATTACCTGTACTTTTACAAACGACTGAGGTTGTGAAGACTGAACATGAGACACAGCTCAATATTGTACAATCCAGTCTATTACTCGTCTGTCTTTTGCAGTTTGTGTGAAATGAGCTTGATTTCACCCCCTGCTCCGAGAAGCACACATCAAAGACTTTGTCACCATTGCTACTGGTACACAAAAACGTCCTTGTGCTTTACAGGATATGTCTAGGGTTGTGAGGAATTAGGTGGCGATGTAGACTGAATTACCTCCCCCAAACCCCACCAACAGCTTCTCTCAAGGACAGGGTTTATTGAAGGTACAGCCAGGGTGAAGACCTCATTGTTTCATCCTGCTCGGAGTGGTGTGTGCGCTCTGTGAATAAATCGAGGCTCTTGGCAAGCAGGGCTGTCATTTGAGCTTTTATTGGTGTTATGCAGTATCTGGTCAGATTTGGACAAGGGTGAGTTGTCATAATCCCTGTATCCAGCAGGCTAATCCTGAAATGAAATTGCACTGTAATCTGTGAAAAATGTTCTCAGGTCCCGTTACAGAGTACATGCATGCATCTTCAAGCAGGCAAATTGCAAAAACAGCATTAACAAAATAGTACATCTAAGCATGGCAGTGATTTAGccttatatcttttttttttagatgtatttttagtttataaaaacagtgcttatagaaaatatacagtgcatttGTAACCTTGAATAAAGTGACACATAGTCAGTTTCAAAACACAGCAATTACGTTCTCACAAAGCTTTTTTCTTAGGTCCCATATTACTGTACAGTATTAATTATTCCTAATCCAGCATTTTGTCGCTTTCCctgagcttttttatttttttaaacatcttctGTCTCTTTCAGATTTTATTACacttcttaatatatatattctttcaaAATGACATTTCTCAAGCTACATGGGAAAGTGTTTGTTTACAAAGAATGATTTTTTTGAAGACCGAGGAGAAAAAGGCAAGTTTCCAAAAACTCTCTCGCTTGTAATTTTGTGCTCATTACTCTGTTTTCTTTGGAATCCTCCCTCCATCAACAGTCTACCCAGAGGTTGTGGCAGAGGTTGCTGGAATCGAGTCTTGGCGAAGGAATAATCATGTGAAAGCAATCCTGTCAGGCAAACAATCCATAGTCCACTTCACAGAATTAGACCATAGGCCCAAAGCTTGTCCATAACTTCAAACACTAACacaaatttgaagaaaaactaaagcaGCAGCATGTTCACTGCCTTCGTTGGAGAAGATGTAAGTCTAAATCCTTGTTACTGATCAGTTCCTCCTACTGTATGAAGGCTTGAAGCTGGTAAAGGAGCAGCACGAGTCCAGGGGGAGCCACTGAGTCAAGGGTGGTCGGGTTTCTGCAGACGCAAGACAAAATGGGCAGCTGTGTCCATGCTATGGTGGGCACTTAAAGAGTTTCACTGCTTCCAGACTCACAGTGCAAAATGAAAAGAGACTCGGGTTTGACAATCAAGCGTGTGAATCCTCCAATTGCAAGgtggtggggaaaaaatatacgCAAAAATGGAAATGACCTTCATGTGAAACGTAACACACACTGGtgtcacaaagaaaaaaaagaaggaaaaagaaagctaAATATGATGCATTTTGAAATCATTGCTTCATCAATGATCTTGCTGGTAACCATTTCAGAATGGTGTACTTCAGATTCTTTACAACTGTTAAAATaagtactttttttattattcaagatGGATAAAATTCTAGatcaaattatttacaaaatatacactacaTCTATGAACAATTAGAAGTGGAAATATGGAAGCATCAAAACAATTCATACTGGGAGTCAACCTTGTGTAATCCCTTTACCAACTTCAGCAATTTAAACCCTTATAGATGGATATTTAAGTCAAATCTGCTGATGATTTGTGAAGTATACTGCTCTGGCAGCCAGCATCTGTGCAgcatggttaaaaaaaactgaaatgtaagtGACTCTTCAGAATGAGGGGCTGGCCCTATAGTCCGGTGACGTACATCTCCACGCCGTCGTTAAACATGAAAATAGTGGTTGTGCTGGTGGAAGCCCCCTGTTTCACGTCGCTGATGCTTTCGTAGAAGTTCTCACTGGGGTGTGCCTTTGTGGGCAATTTCTTCTTTTTGCCTTGCTGGGACGCCGGCGGTTTGTCCCTTTTCCAGTTGGCGTCGATGGTTTCATACGCCGGGTCGGCTTCCTCGGCGCCCGCCCAGGTCTTCTCGCTTATGGACTCGTAGCAGGGGTCCTCGCCGGGCCTCACTGCCTGTGCCCCCCCAGCCCAGCCTGGTGGCTTATTGGCATCGTAGGCAGGGACCTCTTCCCGCTCGGCGTTGGCGGCTGGGCAGCGCTGGTTCTTGTGCCCATTGCTGTCCTTCGTTGGAGGAGGGGGTGATGCAGGAGGCCTCTTCTTCTTGGTGGGCTTGCACACCTTGGAATACATCTCTGATATCTGCAACACAAAGATATGAACTTCTTAGTGGGACCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35471 lncRNA upstream 41045 41925845 ~ 41936214 (+) True G28332
TU35472 lncRNA upstream 112233 41846992 ~ 41865026 (+) False G28332
TU35467 lncRNA upstream 127309 41846992 ~ 41849950 (+) False G28332
TU35460 lncRNA upstream 248826 41728212 ~ 41728433 (+) True G28329
TU35458 lncRNA upstream 281551 41695354 ~ 41695708 (+) True G28327
TU35585 lncRNA downstream 126783 42106867 ~ 42110075 (+) True G28416
TU35590 lncRNA downstream 137837 42117921 ~ 42186382 (+) True G28421
TU35677 lncRNA downstream 452752 42432836 ~ 42437228 (+) False AMCG00008102
TU35705 lncRNA downstream 520590 42500674 ~ 42500981 (+) True G28511
TU35721 lncRNA downstream 604148 42584232 ~ 42586668 (+) True G28527
AMCG00008087 mRNA upstream 55948 41916706 ~ 41921311 (+) True AMCG00008087
AMCG00008088 mRNA upstream 61728 41908543 ~ 41915531 (+) True AMCG00008088
AMCG00008090 mRNA upstream 83384 41892889 ~ 41893875 (+) True AMCG00008090
AMCG00008082 mRNA upstream 131249 41833262 ~ 41846010 (+) True AMCG00008082
AMCG00008084 mRNA upstream 144367 41826740 ~ 41832892 (+) True AMCG00008084
AMCG00008093 mRNA downstream 64720 42044804 ~ 42055393 (+) True AMCG00008093
AMCG00008094 mRNA downstream 91665 42071749 ~ 42072173 (+) True AMCG00008094
AMCG00008092 mRNA downstream 111473 42091557 ~ 42100380 (+) True AMCG00008092
AMCG00008097 mRNA downstream 232288 42212372 ~ 42213085 (+) True AMCG00008097
AMCG00008098 mRNA downstream 299685 42279769 ~ 42289436 (+) True AMCG00008098
TU35066 other upstream 1730021 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 1917873 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2142323 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2472882 39503079 ~ 39504377 (+) True G27847
TU34527 other upstream 3268344 38692739 ~ 38708915 (+) True AMCG00007970
TU35555 other downstream 12775 41992859 ~ 41993377 (+) True G28395
TU35844 other downstream 1125629 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1166689 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1312512 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 3043064 45023148 ~ 45036416 (+) True AMCG00008177

Expression Profile