RNA id: TU35585


Basic Information

Item Value
RNA id TU35585
length 3181
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G28416
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42106867 ~ 42110075 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aactcatGGAAGTACAGTCAttcagaacattaaaaataaataaaataatcaaccTTGATGTTATTTGTTATCTGCTAAATTGTTAAAATCATGTCACGTCTACATACATGTTCCTGTACACAATGTACTACACACTCTAAATTGGCCTACATTAGACTGATGCTTACCTTTAGTGAAAAGTACCAAACATGAAATATGCTTAGGCTTTACTACAGACGAGATATCATACATTGAAATCTGAAAAATCATTCTACATTGTAAATGGGGGGAAATGTATAATGGTAACACTTTCAGTACGCTTCGGGTTTAGTACATCTTCCCTCACAAATGCTCACAAACGTTTTCCTCCTTTTCTAAGGAACTGTTTGCCAGTTCAGTAACTTGAAATTATTTTActgcttctttctttttgaagaCAAATATTCGAAACCACTACAAAcagattaaacaatattttttagaGTATTTTTTGAATCTGTGAATTGTGCTTATATACCCGCCTGGCCGGCATCAGTCACCTATAGGTGAAGGCTTTGCGCAATAATACGCAGTGCATGTTGTGCCGGTTTTATCCTTGTTTTTCGTATCagtttttatattgaaatgtacagaaagCCACCTAAATACGTCAGCTGACATAAAGGACAATATTTATCCGAAAAGGTTGTTATTTATAGTAATACGAGTTTTTGGTACAGAATGTTCATTAACTACATTATAACAATAAAGTGACGTTACAGTAACGCCAACGtaagttacatttatttaatgactCTGTAGTTGAAAGATAATACTTCCTAACCCCTCATTTGTCTGTTaatataaggaaaataaaaagatcatAGAAGTGAAATCTTTTAGAATGAAAAATACAGATGTGTTAGAATTGCATAGGTATGGGACACATCTGGAGCAACTAGGAATACCTTTTTGAAGGAACTGAATTGTGTGCTTTTGGACAACtttaagtcgccttggataagggcttctgctaagaaataaatcataaaagcaTCACAACCTATCACATATGAACTGACCGTAAGTGCATCAGCATTCATTTGTGTATTATAGTCTATTAGAAGTGTTTTGGTAGTTTTAGTGAAAAAGATTGAAACTATGTATTATTGTGAACAacagctgaaacaaacaaaacaaaacaactccCCAGAGGCCTGCAGAAGTATTGTAGTGATATTAGGGGAATGTCTTGGCAGGTGTAGTTTCGCCTGCAATGCATCACTTCTTTATAGGCGACCGGAGCCACCTTGCCATAATGGCGTGTGCCCTTCTTTTTGTATGAGATTGGTAGcccttaaaacaaaataaaaagtattttgacatCATAAGTCAATCATCATTTATTCGTCCTCGAACATCACGTTCTTTAAAGCAAGAGGACCATCCTAACAGTTGGAAAGGAGAATAAAATCTAAACACTTAAGGTTAAACAATTTAATCTTATTGTTTCATATTTCGCTATGAAATACAGTTCACATTGAGCTGTAGattcataatcaaaataaaccacatgCTTAGCTATAGTATCGTACCTATAGGTTTTTAGTGTATGatcagtatgtatgtatgtgtatatatatatatatatgagcgtgtgtatatttatctatctctataaaagtatttttattcagTGGATCATATCTAACTAACGTACATAACACCGCACCGTGCAGATATTGAGTGAATTTCTCCAGAGTCATACCAGAAACAGATTTGCAATTAGACTAAACATGAAATAGTGTGTTgataatattagtttttttgtttttcacattgcaATTTGAAATTGACCTTTCATTATTTGCTAATTTCATGCACTGCGACAGGTGGCgctgttttaatataaaatgcagcaGATGTTGCTTTCAACATTATGGAGCCTTCGCTTTGAActgcaatgcatttcaattaacGACATAGCCTATTTACAGAGGATTGTGTAAGATCCGCAGTGATTTTACACAATGGGTCGACATAACGAAGAATAAACCCCCAAATATTGTTGTTGGCAATATCTAATCACTTGAAACAGAACGCATTATTACCCGGCGAAAATGCATCTGGGAACATTACCTGGTTTAAAATGATATGAGATGTAATTAAACACTCATTTACATTATATGCGTATAAATATGCAACCGCGGAAGCGAACGAAGATTAATATTCACATGCATAATTGGCAAAGAAGACCAGAGACCAAATATGAACTTACAAATGTTGTCACCATTAAGAGTCTTAAGTGTATTGCTCATCAAGAATAATCATTATGTAATTCAATTATTCATAACGGATAATTACTACTATATTGCCTACATTGTTAACTTTAAGGCCTGTGTTCATACACAACATACAcgattttaattcaaaatgtcctGAATTGTGCTCCATTTTATATTGCATGACTCTTTTTAACCCGCTAGTCTACGAATGTATTTATGCAACTTTTATTTTACCGGACAAGGTCCTTGTATTGTGGAGAGACTGGGAGCAATATATTGTGCGTCCTAATTAACCTCTTAATGACTAGTCATACCAATTCACTTAATAGAGCATAAAAAGGAGAATATAGGAATATGACAAGGGCCTAAATAAAAACCGCATCCCAAGCGTCTTTTCATGGCATTTGGGCATATCTTATACGTTACATCAACATATAGTAACCACTAAAACCTTACAATGGTGTCTCATTTTCACCTTTACTTTAAACGACGGAACATATAGGCCTGTGTATAGAGTCTGCATGACTCTGCAACCGCTACAACTGATTTTTAAATACCGATTTAGTTTTGATCCATATACACGCACTGCACAGTTCATTCTGAGAGACCTTAGTGATGCAACTGTGTCAAACTCAATCTGTACATCTGAATCAGAAATGCAAAGCAGACACACGCGTGTGACCAGAAGTCCAGACACCAATGCACACAATTAGTGTCAATGGCATTATGGCGTTAGATTAAGCGGAGCAGACAAATGCAACCTAAACCCGAACCGAACCGGGACTCTATAGGAAAACTGATCTGAAGACCGACTACATATTGAGGCTTGTCAGCATCAACCAAGGCTGGCATTGCGTTTTCAGGTCTCACTCGATTATAAAATGCAGTTTGACGATCCCTGTTTGAAGTTTGGAGGTTCCTCTCTTGGCATTCACCGC

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35554 lncRNA upstream 126783 41977259 ~ 41980084 (+) True G28394
TU35471 lncRNA upstream 170653 41925845 ~ 41936214 (+) True G28332
TU35472 lncRNA upstream 241841 41846992 ~ 41865026 (+) False G28332
TU35467 lncRNA upstream 256917 41846992 ~ 41849950 (+) False G28332
TU35460 lncRNA upstream 378434 41728212 ~ 41728433 (+) True G28329
TU35590 lncRNA downstream 7846 42117921 ~ 42186382 (+) True G28421
TU35677 lncRNA downstream 322761 42432836 ~ 42437228 (+) False AMCG00008102
TU35705 lncRNA downstream 390599 42500674 ~ 42500981 (+) True G28511
TU35721 lncRNA downstream 474157 42584232 ~ 42586668 (+) True G28527
TU35743 lncRNA downstream 511875 42621950 ~ 42622157 (+) True G28548
AMCG00008092 mRNA upstream 6487 42091557 ~ 42100380 (+) True AMCG00008092
AMCG00008094 mRNA upstream 34694 42071749 ~ 42072173 (+) True AMCG00008094
AMCG00008093 mRNA upstream 51474 42044804 ~ 42055393 (+) True AMCG00008093
AMCG00008087 mRNA upstream 185556 41916706 ~ 41921311 (+) True AMCG00008087
AMCG00008088 mRNA upstream 191336 41908543 ~ 41915531 (+) True AMCG00008088
AMCG00008097 mRNA downstream 102297 42212372 ~ 42213085 (+) True AMCG00008097
AMCG00008098 mRNA downstream 169694 42279769 ~ 42289436 (+) True AMCG00008098
AMCG00008099 mRNA downstream 180641 42290716 ~ 42300339 (+) True AMCG00008099
AMCG00008102 mRNA downstream 303557 42413632 ~ 42437183 (+) True AMCG00008102
AMCG00008106 mRNA downstream 328268 42438343 ~ 42442423 (+) True AMCG00008106
TU35555 other upstream 113490 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 1859629 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 2047481 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2271931 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 2602490 39503079 ~ 39504377 (+) True G27847
TU35844 other downstream 995638 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 1036698 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 1182521 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 2913073 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 3039354 45149429 ~ 45171828 (+) True AMCG00008185

Expression Profile