RNA id: TU35706


Basic Information

Item Value
RNA id TU35706
length 320
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G28512
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42500677 ~ 42500996 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaatctacgtggactcctcactttctccatccaaacaatgtggggaagcaataaaaaaggcaaacagaatgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtgatgttcagactgtacaatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagaggcagttcagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35703 lncRNA downstream 23687 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 99603 42360908 ~ 42401074 (-) False AMCG00008104
TU35634 lncRNA downstream 198580 42301277 ~ 42302097 (-) True G28456
TU35621 lncRNA downstream 210432 42283959 ~ 42290245 (-) True G28446
TU35575 lncRNA downstream 408479 42091457 ~ 42092198 (-) True G28410
TU35727 lncRNA upstream 21809 42522805 ~ 42594860 (-) True G28532
TU35870 lncRNA upstream 596202 43097198 ~ 43098473 (-) False AMCG00008124
TU36079 lncRNA upstream 1009764 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 1362611 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 1393183 43894179 ~ 43895951 (-) True G28907
AMCG00008104 mRNA downstream 126885 42359900 ~ 42373792 (-) True AMCG00008104
AMCG00008103 mRNA downstream 146045 42331139 ~ 42354632 (-) True AMCG00008103
AMCG00008100 mRNA downstream 170199 42310632 ~ 42330478 (-) True AMCG00008100
AMCG00008101 mRNA downstream 201344 42295442 ~ 42299333 (-) True AMCG00008101
AMCG00008096 mRNA downstream 232886 42249646 ~ 42267791 (-) True AMCG00008096
AMCG00008108 mRNA upstream 29085 42530081 ~ 42537841 (-) True AMCG00008108
AMCG00008112 mRNA upstream 197141 42698137 ~ 42704412 (-) True AMCG00008112
AMCG00008114 mRNA upstream 263997 42764993 ~ 42808108 (-) True AMCG00008114
AMCG00008118 mRNA upstream 514360 43015356 ~ 43028990 (-) True AMCG00008118
AMCG00008117 mRNA upstream 528860 43029856 ~ 43036431 (-) True AMCG00008117
TU35536 other downstream 650787 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1298852 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 1483429 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 2996085 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 3408922 39088922 ~ 39091755 (-) False AMCG00007993
TU35782 other upstream 260008 42761004 ~ 42764654 (-) True G28581
TU36269 other upstream 1916878 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 3549699 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3979950 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 5212938 47713934 ~ 47918462 (-) True AMCG00008245

Expression Profile