RNA id: TU35721


Basic Information

Item Value
RNA id TU35721
length 1409
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G28527
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42584232 ~ 42586668 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtctgaGCTGAGCTGAGACACTGTACatactgcaacaatagcccaggtgcttcacaaaagtggctttatgggagagaaaataactaattaaatctgggctagagtttgccagaaggcatgtgggagactctgaagATTCTttgtctgatgagaccaaaatttTGTCCTCAACACTAAGCACTATGTTTGGCTCAAGcttaacaccgcacatcatcctgagaacaccacccctaccatgaagcatggtggtgcagcatcatgctatggggatgcttctctgtgtcagggccgGGAAGCCTTTTAAAGATAAAGGGCAAAAttgatgcagcaaagtacagagaaattctggaagaaaacctgctgaagtccgcaagagacctgggacataggagaagattaatcttccagcaggacaatgaccaaACATACAGCTAAAGCCACACTGGCATGGCTTAAAAAcgaaaaggtcaatgtcctggagtggcccagtcaaagcctggacctcaatccaattgagaacatGTGGAAAGatttgaacattgctgttcaccaaaagtcCCCATCGAACGTGATGGAgattgagcaattttgcaaagaataaTGAGCAAAAGTTGCTGTGTctagatgtgcaaagctggtagagactgaTCTACATAGattcatggctgtaattgctgccaaaggtgccactaccaaatattgactgacgggggtgattacttatgcattttctgttttgtatttgtaattaatttagaacaatttgcagattatatttttcactttgacattatgaacattttctgtgttgttcagtggcaaaaactccggATTAAATCcgttctgatttcatgttgtaacacaatgacatgtgggaaagtccaagggggtgaatacttttgagagacaCTGTATCTGTCTTTTTGTCTATCTACCTTTCTATGTATTTGGGGTGCATTTTGGATCTCCAAAGTCTGAAACAAAGGACACCAAAGACATATAGAAAGAGGACTGAAACCAGCTTTGTTTTTATAACTTAGACTAGGAATAGGCAATAGCAATAGCTATAGAATAGGCTGATAGCAATGTGGATGAGCGGGTTTGTGGGATGTCTGTAACTTTGAAAGAAACTCAAGTTGCAAGTAACAACCATATCATCTCTCCACCACTGGACATTTGGTCCGCACTGGTATAGTATTTGCCAACATCCTTACATCTTGATCCAGAAAATCATTATGATCATGTTAAGTCTCCTTTGAGTCATGGGAGAAAGTGTGTTCTGGCAAGATGATTAATAATTGCAGTCTGAACAAAATCaaaggtgaaaaataaaatattgtgcaCAACAAAGTAGCTAGGCTGCTTGGCTTGAATGTTTTAATCATACTTCACTGTACTTGTCTGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35705 lncRNA upstream 83251 42500674 ~ 42500981 (+) True G28511
TU35677 lncRNA upstream 147004 42432836 ~ 42437228 (+) False AMCG00008102
TU35590 lncRNA upstream 397850 42117921 ~ 42186382 (+) True G28421
TU35585 lncRNA upstream 474157 42106867 ~ 42110075 (+) True G28416
TU35554 lncRNA upstream 604148 41977259 ~ 41980084 (+) True G28394
TU35743 lncRNA downstream 35282 42621950 ~ 42622157 (+) True G28548
TU35847 lncRNA downstream 522382 43109050 ~ 43120781 (+) True G28637
TU35900 lncRNA downstream 591134 43177802 ~ 43201203 (+) True G28678
TU36139 lncRNA downstream 1307441 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 1307517 43894185 ~ 43895951 (+) False G28862
AMCG00008110 mRNA upstream 4249 42552397 ~ 42579983 (+) True AMCG00008110
AMCG00008107 mRNA upstream 63882 42509887 ~ 42520350 (+) True AMCG00008107
AMCG00008105 mRNA upstream 136112 42444636 ~ 42448120 (+) True AMCG00008105
AMCG00008106 mRNA upstream 141809 42438343 ~ 42442423 (+) True AMCG00008106
AMCG00008102 mRNA upstream 147049 42413632 ~ 42437183 (+) True AMCG00008102
AMCG00008109 mRNA downstream 69523 42656191 ~ 42657239 (+) True AMCG00008109
AMCG00008113 mRNA downstream 105358 42692026 ~ 42692859 (+) True AMCG00008113
AMCG00008111 mRNA downstream 118316 42704984 ~ 42713579 (+) True AMCG00008111
AMCG00008115 mRNA downstream 174858 42761526 ~ 42762545 (+) True AMCG00008115
AMCG00008119 mRNA downstream 425840 43012508 ~ 43018451 (+) True AMCG00008119
TU35555 other upstream 590855 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2336994 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 2524846 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 2749296 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 3079855 39503079 ~ 39504377 (+) True G27847
TU35844 other downstream 519045 43105713 ~ 43108242 (+) True G28636
TU35886 other downstream 560105 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 705928 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 2436480 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 2562761 45149429 ~ 45171828 (+) True AMCG00008185

Expression Profile