RNA id: TU35782


Basic Information

Item Value
RNA id TU35782
length 3651
RNA type TUCP
GC content 0.42
exon number 1
gene id G28581
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 42761004 ~ 42764654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAATAAGCAAAATAGGAAACCATTTTTTCCAAAAACAACGAAAAATAAGACGAAAACAGAAACCAGCCTGAATGTAACTACAACAGTCCAAATTTAACTTTTTCGTTTATATAAACAGGATTGAAAATTGATCCCCTCgcaaaatacatgaaattaaaaaacaaaaacccgcTGCTGCAGTATAAGTTTGATTTCAACACAGTTGAATCAATAACAAACCAAAGATTGTTAAATGCATGACTCTTTTTAAcaatagtttttaaatgcaagcACCATGCTTTTCCATATGATCTGAcagtttgttaatttaaaatcattaaaataaaaaaaaaacttaactaTGCATCTGGCCAGCAGAACCAGAAactccaaataataataataaatcaatacaaaataataataaaatagaaacatacacatatatagttttcattttgaGATTTTGCAAAACCTGAatccttttttttaactggccggcagaaaaaaaatacaggaaaacatataacattaatcattgtaattttcttttcaaatgtacaCGTTAATtacaaaagaataattaaattgtaaataaaccccTGATATTTAGGCATGTTGCCATGCACATACAAAAAATGTCTTTGAATAAGTTTGAGATTAATCGGTCAAGTGGAAAGCTatgatttgttaaaataatttaggTTGAGAAGGCCTTTATTCCAAATGCATTAGTTTTGGGAAGTGAATACTTtttcttgagaaaaaataaCGTTCTAATATAGTCAGATTATATAATTTAGTAATGTCAAGTAGGCGGTACTCAATGCTATTTcttgaaaacatttataattaagtacaaaaaaaaatacacaggaatGCAGGTAGCAAACGgtttatctgtgtttattttaacgCAAACACAATCCAGATATAGAGGGATCGCAACTGCTTGGTGGAGTATCCCAGTATTTTACCAAATATACCAAATATCCTGCTGTATTCACAATGAAATAGCCTCAGTGGCCCATAGGATGTTCCTGTTATCattagcttttgtttttatgataatcagtgttgtttcaTTTATCACACCTCCtaacatgttattattatagtatgtCTTCCCTGAAGGCGGTCTGCAAAAAAACCCAAAATGAAAACTCATGATCCGAAAAAGTGCACTTAATATTAACAAAGTTGGTTGTCTTTAAtgcaaactgcaaaacaaaatgcccataactttcaaacttaaaaaacaaaacaaaaaaaagtcgaAGTTTAAAACCAGCCTCCTTAAAATGTCTTTGTGCAGTTTGATGTTGCATATATTTACAAGCTAAATAAACCCAAACATTATGAAAACTGCACAAGCAGTAATGTTGATATTGTGATCGTTTCATTTatataaccaaaacaaatgaaaagctcAGATCAACAACATGCTTTTaagataaacaagaaaaaagtacaaaatagaAATTATTACCATACATGTCCAGCATGCaggattaatattttaatgcagattttttttaatatatatatatttatatataaccaAGCAGGCAATAAACCAATGAGATGTTGCATAAAATGTTCCCCATTTGACAGTTTTAATTCGCAGGCGGGGTACATAAGAGAAAGAAAGTTTGCATATGTGaagtcttttttcatttctttttctttttgtcgtttttttgttttcctttctcgGGCAAGTGCATATGCAAGTCTTATAAAGTATTCTCCTTACTTAGAAGACGTCTGATATGACCTTTCTTAACATTCAAGAAGGAAACCACAGTAAGAAGAAAGTCCACTTTTTTTTCCATGCCCCTAGCAGATTAAAGCAATCTACAAAAAAGAAAGTTCGGATCTAGTACTTTTTTTGTgtcgtttgtttttgttttgagaagaaaaaatagtCTCGTCTCTACAAGCAACTAAGCTACAAAGATGCTGcaattgtaagaaaaaaaaaatctatttgctCTTTGTATTTCAGTTGTCACATGGATGGAGATGATTAGATATgagattattatttcttaatttcttctaTTAGTATAATCATTAATATTGATtctgatcattattattaatattgtcaGGATCAGCTGTCGCACTCACATGAAGAACTCTGGCGATGACGGGTTGTCACTAGTGGACCCTGCCTCTCGGAACCCGTTATTGCCCGTCAGTTTCTCGCATTTGAGTTTGTACGCGTCTCTTTCACGGGCCAGCCGGTTGATCTCTTGCTTGAGCTGCTCCACCTGGTTGATCAGCTGGGTCTTCTCGTTCTCCAGGACGTGTTTCTGCTGGACCCGCTTGTACCGGCACGACTGCGCGTAGCCCCGGTTCTTGAGGGTCCGGCGCTTCTGCTTCAGGCGGATCACTTCATCCTTGGTGAAACCCCGCAAGTGCCGGTTGAGCTCCCGCACGGACATGGACACCAGCTGCTCGTCTGAAAAGCGGTCCTCCACGTTGAGCCCCCCTCCTCCGCCGTGGTGGCCCTGCTGGGGGTGGTGGTGATGATGGTGGCGGTGGTGGAGCTGTTGGTGGGACCCGGGCGAGGTAGGAGACGGGCTGTCCGGGTCCTGGCTGTGATGGTGGTGATGCTGGCTGTGCACATGGCTGTGCGCCCCGGGGTGACCCGGGAGGTCTTCGGGATGATGGGGAAGCCCGCCGTACTGGTGATGGTGCTGCTGGGCATGCCCGTGGCTGTGATGGTGATGTGCTGGTCTGTAGCCGTCGAAGCCACCCTGCTGTAGCTGCTGCTGGACGTGTGGGGGTGGAGGGTGGCCGTGGGCCGTGGCACCGATCAGCGCTTCTACTGCGTCCTCCGGGGTCAGGTTCAACGCCTGGGGGTCCATCTGCTGGTGGTAGCCGCTGCTGGGCATCCAGTAAAGCTCTTCCAAGTGGTTCTTCTGCTCGGTGGGACTGAAGCTGGGCGAGGAAGGGACCGAGCTGCACGGGGTGCTGATTGGGGTGGAGGACACGGAGCCCTGCGGCTGGAGCCGGGTGCACTGCCGCACGGAGGAGCGGTCCAGCCCGGCTAGCGCTTCTTTCTTCACATCGAACTTCATCAAATCAAAGTCATTGACGTATTCCAATGCCAGCGGGCTGGTTGGCAGCTCTGGCCCCATGTTCAACTCTCCAGccatagtttgtttattttgtaaactagGCTTCTGTACTTCTGCCAACGTCGAAACCCCCCCGACTTTAGCTGTCCCGTCCGCTCTCCTGCAATAGTCTCTAACAGCCCTTCCACCGCTGCGGACGCGAGTTTTCTAACGTGCGACGCTCTTCGGCGATAACAAGGAGAAAAACTTTCTCTCTAATGCACTGCAAACAACATCAGTATCTGCGGTTGTTTCAAACCGGCCTCTGTAATGTTGTAGTCTGCCGAACAAGAGGTAGGAATGATTTGCCGTACATGCAAAAGTACGAAATGCAGTCTCTCTTCTTTTCCTGCAAACCAGCAGACATAGAAACCGTTGCGCCCCCTCCTCTTGCCGAGACGCGCTACTGTAAGTCCTTTGGCCGGATCGGAGGTGAGCAGGAAGACGGATTTTCGCTTTGAAAGCAGCTTTCCTTCTCTGCACCGCAGAGATTTCTGCCACCTTCCCAGACGCACTAACTCACTCCCGAGTCTCTCCAGTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35727 lncRNA downstream 166144 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 260008 42500677 ~ 42500996 (-) True G28512
TU35703 lncRNA downstream 284014 42475720 ~ 42476990 (-) True G28509
TU35673 lncRNA downstream 359930 42360908 ~ 42401074 (-) False AMCG00008104
TU35634 lncRNA downstream 458907 42301277 ~ 42302097 (-) True G28456
TU35870 lncRNA upstream 332544 43097198 ~ 43098473 (-) False AMCG00008124
TU36079 lncRNA upstream 746106 43510760 ~ 43583413 (-) False AMCG00008144
TU36187 lncRNA upstream 1098953 43863607 ~ 43893808 (-) True G28900
TU36196 lncRNA upstream 1129525 43894179 ~ 43895951 (-) True G28907
TU36208 lncRNA upstream 1231464 43996118 ~ 44000866 (-) True G28914
AMCG00008112 mRNA downstream 56592 42698137 ~ 42704412 (-) True AMCG00008112
AMCG00008108 mRNA downstream 223163 42530081 ~ 42537841 (-) True AMCG00008108
AMCG00008104 mRNA downstream 387212 42359900 ~ 42373792 (-) True AMCG00008104
AMCG00008103 mRNA downstream 406372 42331139 ~ 42354632 (-) True AMCG00008103
AMCG00008100 mRNA downstream 430526 42310632 ~ 42330478 (-) True AMCG00008100
AMCG00008114 mRNA upstream 339 42764993 ~ 42808108 (-) True AMCG00008114
AMCG00008118 mRNA upstream 250702 43015356 ~ 43028990 (-) True AMCG00008118
AMCG00008117 mRNA upstream 265202 43029856 ~ 43036431 (-) True AMCG00008117
AMCG00008122 mRNA upstream 274744 43039398 ~ 43043630 (-) True AMCG00008122
AMCG00008125 mRNA upstream 298180 43062834 ~ 43083682 (-) True AMCG00008125
TU35536 other downstream 911114 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 1559179 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 1743756 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 3256412 39500321 ~ 39504592 (-) True G27861
TU34691 other downstream 3669249 39088922 ~ 39091755 (-) False AMCG00007993
TU36269 other upstream 1653220 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 3286041 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 3716292 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 4949280 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 5359271 48123925 ~ 48124682 (-) True G29544

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043656 True 1713 mRNA 0.57 1 NC_007134.7 3407065 ~ 3408777 (-)