RNA id: TU35844



Basic Information


Item Value
RNA id TU35844
length 553
RNA type TUCP
GC content 0.42
exon number 6
gene id G28636
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43105713 ~ 43108242 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCATTTTCTGCTTTGATTTTctgtttttcttctttagaCATCTGTTTCCTGGCCTCAGACTGGGCCTTGAAATAGTCATTCATCTCTGTGAAATTGCACTTATTTAGATCAGTGATAATTGACTTCTCCTCACTCGTCATTTCCTTCCGCCAGTCTTTGAAGAAGTTTTTCCGGAAGATGTCCTTGGTAGTGTATTCATGGTCCAACATTTTGCCGAAAAAGGTTGCCACTTCTTCTGCCTGGGGAGACAGCTTCATACACTTccCATCATAGTAAAACTTGACATTACCAGGAAGAGGTTCGTAAGGGGGTGCAAAGACGGGACCTTTGTGTTCGAGAAACTTCCACTTTACTCCGTCTGTGTATCTCTCCTCCTCCCACCATTTCCATTTCTCCTCAGGctctttctttgctttctttttgcCATCAGCAACAGCTCCTTTCTTGTCCTTAGTCTTCTTTTTGGGTTTGATGTCCTCATCATCCTCTTGTTTCCTCTTTTTGgccttcttttcattttccgTTTTGATTTTCTTGGGCTTTAAGTCATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35743 lncRNA upstream 483556 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 519045 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 604732 42500674 ~ 42500981 (+) True G28511
TU35677 lncRNA upstream 668485 42432836 ~ 42437228 (+) False AMCG00008102
TU35590 lncRNA upstream 919331 42117921 ~ 42186382 (+) True G28421
TU35847 lncRNA downstream 808 43109050 ~ 43120781 (+) True G28637
TU35900 lncRNA downstream 69560 43177802 ~ 43201203 (+) True G28678
TU36139 lncRNA downstream 785867 43894109 ~ 43895951 (+) True G28862
TU36138 lncRNA downstream 785943 43894185 ~ 43895951 (+) False G28862
TU36140 lncRNA downstream 785943 43894185 ~ 43895128 (+) False G28862
AMCG00008116 mRNA upstream 50028 43052668 ~ 43055685 (+) True AMCG00008116
AMCG00008119 mRNA upstream 87262 43012508 ~ 43018451 (+) True AMCG00008119
AMCG00008115 mRNA upstream 343168 42761526 ~ 42762545 (+) True AMCG00008115
AMCG00008111 mRNA upstream 392134 42704984 ~ 42713579 (+) True AMCG00008111
AMCG00008113 mRNA upstream 412854 42692026 ~ 42692859 (+) True AMCG00008113
AMCG00008120 mRNA downstream 36563 43144805 ~ 43156072 (+) True AMCG00008120
AMCG00008121 mRNA downstream 51327 43159569 ~ 43175126 (+) True AMCG00008121
AMCG00008127 mRNA downstream 110857 43219099 ~ 43223126 (+) True AMCG00008127
AMCG00008130 mRNA downstream 124068 43232310 ~ 43251526 (+) True AMCG00008130
AMCG00008128 mRNA downstream 144355 43252597 ~ 43259195 (+) True AMCG00008128
TU35555 other upstream 1112336 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 2858475 40241312 ~ 40247238 (+) True AMCG00008036
TU35023 other upstream 3046327 40056632 ~ 40059386 (+) True G27974
TU34945 other upstream 3270777 39832389 ~ 39834936 (+) False AMCG00008020
TU34851 other upstream 3601336 39503079 ~ 39504377 (+) True G27847
TU35886 other downstream 38531 43146773 ~ 43149043 (+) False AMCG00008120
TU35919 other downstream 184354 43292596 ~ 43301422 (+) False AMCG00008132
TU36366 other downstream 1914906 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 2041187 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 2232354 45340596 ~ 45343914 (+) False AMCG00008194

Expression Profile