RNA id: TU36139


Basic Information

Item Value
RNA id TU36139
length 1843
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G28862
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43894109 ~ 43895951 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCACTGTCTGTATGACACACActatggaaaaaagaaagaccacacaaaaatatttaaatagaaatttgtatttacatcaatattaaCATCAAGAAccaagtaagaaaaaaaaaatgcaatagtaATTTACATCCTGAAATTATGACcccatatttttaattttctgtaattagtttttctttccattggACAAAGAATACAGAGCATAAAGgaacttttgcattttttttctgaagaattAAAAGCATTAGCACGGAACGTCCTGCAGGCTTCTCTGTATTTCACCGCATAAAGACTCTAAAAATATTTCCTCACTAGGctatttaatgaaataattaaaagcaacttCCTGTCCTTACCATCggtcaccaaaaaaaaaaaactaaacaaaaccccccaaaaaagtggCCTTTTGCAAATTTCTTCTAGGTCTTAAAAAGATAAGTCTAAAATTCTAATTTCATGTATACTTTTGAAGACAGATTTAACTGGCTACACGGTGTTTCATTTTACTctgctactttttttttttcttttctttttctccaccAGTCTCAATACTCTAGTGTGTAGAGGGAACTGACACGGGTCACATGACCAGAATCATTCTGAAGCTGCTGGTATCCAAACTGCACAGGGCGCCCCCTGTTGGCCGCACCcgaaaaacaaacccaaatcATAAACCATTACTGTTGCTGAAACCGATCCATTCTATACTGTAAGTAtgatacaatatacaaaagaaaatctataatacatattcatatgtatatatgtgtgtacatatacacatacatacatatatatacacacacacgtatatatgacacacatatatacataaatacactgtCAATGTCAGAAACTGCTCTAAGcactgagggaaaaaataaatctttggaTTGCGCATGTCTTACAAGGTAGATATTTTAAAGAGCATCGAGAATAATTAAAAGGgaggaaattaattttaaaataaaataaaaatcacacaaaagcaACCTTAATGCACACTGCCAAGGTacaagaataattaaatattacagacaacccccccacaccaccaccCCCCATTACCTCCTCACCTCCTGCTCGACTCATTCCCCACAAATCATTTCTCTCTGCCTAGTCTCAACACTACGGCCCATTACAGGGCTTTACATCACGCCTGCTTCCTGCACACACTGCTAGACAAGACTCCTGGCTCGCTATCTGCCCTGGTTCATTACAAACAGCCAAGGTAACCTAAAGGAGGGAtggggaggaaaagaaaaaaaaaacagccgcTGAAGGCCTTCTACACATGGGTGTCTTCTTTAatgcaacaaatacaaaaaatgttgaaaatgtatttggtgtTTCAACAGACTAGGGCACACGGTACTAACTTCTGGTAGTAGTTTTACAGACGTTGTGGGGAGCATGTGTGGAATGAAAACAGGGACTCACCGCTTCCTCACGTTGATAAACCATCTAAACACGGGGGACTGGCGCTTAGGAGACAACAGTGCTCTACTAAGAGAGCAGGGAAAGCGAACACATGCGGTCTGTGCTCGGCGCTCTTCTCGGCACTCTTCTCGGCACTCCTACTCAACCTGTCAGGCCACAAGCCTGAGGGACACCTTAGCAGTAGGATGAGCCACTTGTGTATTCAACACttgcagtgttttattaaaagatcTGATGATAAAATCAAAAACTGCAAACCCCCAACTCCCCAGCCGTGCCCACTCCCCCTCCGCTTTAGCATCAGAAATAAAAGTgcctaaaaattaaaaaaaataaagtgtctcACCGGTTgtctattaaaaaaattgtattcaaaTGTGACTTCAGAGTNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35900 lncRNA upstream 692906 43177802 ~ 43201203 (+) True G28678
TU35847 lncRNA upstream 773328 43109050 ~ 43120781 (+) True G28637
TU35743 lncRNA upstream 1271952 42621950 ~ 42622157 (+) True G28548
TU35721 lncRNA upstream 1307441 42584232 ~ 42586668 (+) True G28527
TU35705 lncRNA upstream 1393128 42500674 ~ 42500981 (+) True G28511
TU36226 lncRNA downstream 158014 44053965 ~ 44056608 (+) True G28931
TU36252 lncRNA downstream 795590 44691541 ~ 44749908 (+) True G28956
TU36298 lncRNA downstream 872726 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA downstream 899973 44795924 ~ 44798463 (+) True G28995
TU36485 lncRNA downstream 1457765 45353716 ~ 45354079 (+) True G29148
AMCG00008149 mRNA upstream 1011 43854025 ~ 43893098 (+) True AMCG00008149
AMCG00008150 mRNA upstream 198545 43678115 ~ 43695564 (+) True AMCG00008150
AMCG00008145 mRNA upstream 230401 43662564 ~ 43663708 (+) True AMCG00008145
AMCG00008146 mRNA upstream 272966 43605257 ~ 43621143 (+) True AMCG00008146
AMCG00008140 mRNA upstream 387056 43497288 ~ 43507053 (+) True AMCG00008140
AMCG00008154 mRNA downstream 80350 43976301 ~ 43999833 (+) True AMCG00008154
AMCG00008155 mRNA downstream 105783 44001734 ~ 44034340 (+) True AMCG00008155
AMCG00008156 mRNA downstream 138435 44034386 ~ 44036127 (+) True AMCG00008156
AMCG00008153 mRNA downstream 144827 44040778 ~ 44044810 (+) True AMCG00008153
AMCG00008157 mRNA downstream 210504 44106455 ~ 44131719 (+) True AMCG00008157
TU35919 other upstream 592687 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 745066 43146773 ~ 43149043 (+) False AMCG00008120
TU35844 other upstream 785867 43105713 ~ 43108242 (+) True G28636
TU35555 other upstream 1900732 41992859 ~ 41993377 (+) True G28395
TU35066 other upstream 3646871 40241312 ~ 40247238 (+) True AMCG00008036
TU36366 other downstream 1127197 45023148 ~ 45036416 (+) True AMCG00008177
TU36420 other downstream 1253478 45149429 ~ 45171828 (+) True AMCG00008185
TU36476 other downstream 1444645 45340596 ~ 45343914 (+) False AMCG00008194
TU36524 other downstream 1544562 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 2371940 46267891 ~ 46268327 (+) True G29353

Expression Profile