RNA id: TU36196


Basic Information

Item Value
RNA id TU36196
length 1773
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G28907
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43894179 ~ 43895951 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNACTCTGAAGTCACAtttgaatacaatttttttaatagacAACCGGTgagacactttattttttttaatttttaggcACTTTTATTTCTGATGCTAAAGCGGAGGGGGAGTGGGCACGGCTGGGGAGTTGGGGGTTTGCAGTTTTTGATTTTATCATCAgatcttttaataaaacactgcaaGTGTTGAATACACAAGTGGCTCATCCTACTGCTAAGGTGTCCCTCAGGCTTGTGGCCTGACAGGTTGAGTAGGAGTGCCGAGAAGAGTGCCGAGAAGAGCGCCGAGCACAGACCGCATGTGTTCGCTTTCCCTGCTCTCTTAGTAGAGCACTGTTGTCTCCTAAGCGCCAGTCCCCCGTGTTTAGATGGTTTATCAACGTGAGGAAGCGGTGAGTCCCTGTTTTCATTCCACACATGCTCCCCACAACGTCTGTAAAACTACTACCAGAAGTTAGTACCGTGTGCCCTAGTCTGTTGAAacaccaaatacattttcaacattttttgtatttgttgcatTAAAGAAGACACCCATGTGTAGAAGGCCTTCAgcggctgttttttttttcttttcctccccaTCCCTCCTTTAGGTTACCTTGGCTGTTTGTAATGAACCAGGGCAGATAGCGAGCCAGGAGTCTTGTCTAGCAGTGTGTGCAGGAAGCAGGCGTGATGTAAAGCCCTGTAATGGGCCGTAGTGTTGAGACTAGGCAGAGAGAAATGATTTGTGGGGAATGAGTCGAGCAGGAGGTGAGGAGGTAATGGGGggtggtggtgtgggggggttgtctgtaatatttaattattcttgtACCTTGGCAGTGTGCATTAAGGTtgcttttgtgtgatttttattttattttaaaattaatttcctcCCTTTTAATTATTCTCGATGCTCTTTAAAATATCTACCTTGTAAGACATGCGCAAtccaaagatttattttttccctcagtgCTTAGAGCAGTTTCTGACATTGacagtgtatttatgtatatatgtgtgtcatatatacgtgtgtgtgtatatatatgtatgtatgtgtatatgtacacacatatatacatatgaatatgtattatagattttcttttgtatattgtatcaTACTTACAGTATAGAATGGATCGGTTTCAGCAACAGTAATGGTTTATgatttgggtttgtttttcgGGTGCGGCCAACAGGGGGCGCCCTGTGCAGTTTGGATACCAGCAGCTTCAGAATGATTCTGGTCATGTGACCCGTGTCAGTTCCCTCTACACACTAGAGTATTGAGACTggtggagaaaaagaaaagaaaaaaaaaaagtagcagAGTAAAATGAAACACCGTGTAGCCAGTTAAATCTGTCTTCAAAAGTATACATGAAATTAGAATTTTAGACTTATCTTTTTAAGACCTAGAAGAAATTTGCAAAAGGccacttttttggggggttttgtttagttttttttttttggtgaccGATGGTAAGGACAGGaagttgcttttaattatttcattaaatagCCTAGTGAGGAAATATTTTTAGAGTCTTTATGCGGTGAAATACAGAGAAGCCTGCAGGACGTTCCGTGCTAATGCTTTTaattcttcagaaaaaaaatgcaaaagttcCTTTATGCTCTGTATTCTTTGTccaatggaaagaaaaactaattacagaaaattaaaaatatgggGTCATAATTTCAGGATGTAAATtactattgcattttttttttcttacttggTTCTTGATGttaatattgatgtaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36187 lncRNA downstream 371 43863607 ~ 43893808 (-) True G28900
TU36079 lncRNA downstream 310766 43510760 ~ 43583413 (-) False AMCG00008144
TU35870 lncRNA downstream 795706 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 1299319 42522805 ~ 42594860 (-) True G28532
TU35706 lncRNA downstream 1393183 42500677 ~ 42500996 (-) True G28512
TU36208 lncRNA upstream 100167 43996118 ~ 44000866 (-) True G28914
TU36272 lncRNA upstream 591259 44487210 ~ 44487419 (-) True G28973
TU36273 lncRNA upstream 770392 44666343 ~ 44666577 (-) True G28974
TU36277 lncRNA upstream 783865 44679816 ~ 44680042 (-) True G28977
TU36278 lncRNA upstream 785474 44681425 ~ 44681769 (-) True G28978
AMCG00008148 mRNA downstream 217802 43666568 ~ 43676377 (-) True AMCG00008148
AMCG00008147 mRNA downstream 338146 43533559 ~ 43556033 (-) True AMCG00008147
AMCG00008144 mRNA downstream 364092 43512861 ~ 43530087 (-) True AMCG00008144
AMCG00008135 mRNA downstream 454113 43432676 ~ 43440066 (-) True AMCG00008135
AMCG00008136 mRNA downstream 462093 43411209 ~ 43432086 (-) True AMCG00008136
AMCG00008152 mRNA upstream 1265 43897216 ~ 43922028 (-) True AMCG00008152
AMCG00008151 mRNA upstream 66127 43962078 ~ 43972300 (-) True AMCG00008151
AMCG00008159 mRNA upstream 148982 44044933 ~ 44071985 (-) True AMCG00008159
AMCG00008158 mRNA upstream 177712 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008164 mRNA upstream 825788 44721739 ~ 44740915 (-) True AMCG00008164
TU35782 other downstream 1129525 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 2044289 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 2692354 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2876931 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 4389587 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 521923 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2154744 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 2584995 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 3817983 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4227974 48123925 ~ 48124682 (-) True G29544

Expression Profile