RNA id: TU36208


Basic Information

Item Value
RNA id TU36208
length 4667
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G28914
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 43996118 ~ 44000866 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgcaTATCCCCTTTATGTTATAAGCAAGCTAGTTTCAGAAATTATAGGctttaaataaaaaggacaCTTTCTCTTTTACACTTAAGTTTTTACACTaacaattttaaatgcagttattcTCTTTAATAAACAATGGACATTAGGAATGGAAAACTCAGAAATGTACAACCAACCAGACTTTTACAGTAGCTggaattatatacacattttcctCCTCTTACACtgaggaaaatacatttaacagtactctacagaatattttatattctggCCTCATTTCTCAAATATCCCTCCTCCGTTATTTAACTTTGAATCAGAAATGGCTGGAACAAAATATGCTAATCATCCATACTTTCCAACAACTACTCATACACTTGGTCTCATTTTTTCAGAAGCTATGTATGTAGAGGTTTATACTCAGAACAAACATGTTACTCTACTGTCAAACTCGTTGAACAATAAaataagtaacagaaatgtcaaatGTTAATTTCACAAATCTGAATTTTCTATACTGCAGCACAGTAAACAGactttaataaacacaaaaaaggatcaaaacaaacttttaagCATTTCGTCTCACAAATGTTTTGATGCagtcatggaaaatgtatgtcatgttcttttttttgttttgtttttttaaaaaactgtacaatctttatatatttttcttttcaaaaaatAATCCCGTTAATAAAATTCCAAAATCGGAATGATCAAAGTAGTTTGcatgtttcaaaatattttttttttcttttttttttttttgggagatTTAGATTTATATTACAGCTGACAGAAAGAAATCTATACTAACAGTAttgaataataattagaaaaaaacacattctgaatCAACTCACAGGACGACAAATGCGTCAAATGTACAAGACAAAAAGCACAACCAACAGATGTGATAAGTgatctttgttttcttgtgtcaagaaaaaaaaaaaaacaccaaacaaaataaacaattaaaacagatgAATGAAGGTGACAatgaaatgtacagtatgtttaatGACATCCAACATTTgcacattatttacaaaataatataataaaaaacgaCAGGATATGAAGCACACAACACAAGGAGCCCTGCTCATTAAGAAAAGGGAGCTAATGCTATACAATGTAGTGTAGCCCATGTTCTTATACACAAATTAACAATCTTCACATCCTCTCAAGGTCAGTACACAGACGAGCAGgttcacatttttacatgtttcacatataatatattcaccttttaatttgttctatTTCAGTCTCTCTgcctcactcacacactcggCTCTTCCATCCTGTGTACACAGCTCTACTCTATGTGGAAATGAACATTGCCATTGTGGTCTGGACATCCGCAACTCCTGCTTGTATTGCCTACAGTCCCAGCATTTTGGGCAACAACTACTGGGATTgtctgtacattaaaaaaaagttttaacttgaaaaaaatgaaacaaaaacaaaacaaaaccaaacaaaaatactaaaataaaatcatatggggtgttatttacattttttttaaccttctatttttttttaccctaaCAAGcaacacatacatgtataaactAACTGTAAATATAAAGTGTGGAAGTGTTAGGGTACAGTACAGCAACTTTCACAATGCTGAAAAGCAAAACCAAGAAAATGGGCTGACCTGCAGAGGGCAACATAAACCATTTTTATACATCAAGAAACTGTTGAACAGTTAAGCTATATTAATAGCGGCCATCTAAACCACTTGCAACCTGATAGGCGAAGAGGAGTGTGTCACTCCGAAATGAGCCCACCAAATGTCACctgtaaatacattgaaatctCCAAATGGGTCTCCTCTGCCAATAATTTCTTTAAGGTTAAGTCAggcattttatatgaatgtgGGTGTGGCTCCCCATTttaacttttgtattattttttatatttttaaagaaataaactgttTTCAACACTTAATGTTCATTGGTTTCCAGAGAACAGAGACAGTTGTAAATGTGCTATACTCAAATTGCTTGccataataaaatcaatgttgCACAGATGAAAACGAAACAAAaggcaacattgtaaaaattGTAGGCAATCCAATCTAAAACACCACAATAAAATAGACAAGGAGTTTCTGCAGCAGTACAAGAttctaattaaacaaacagcATGGAGAAAATCAAGATATTCAGTTTCTAGAACGTCTGGTGTTAAATGACCTCTGGTAgaatcatattatatataaatatctaaatgGACTGCATATAAATACACTGTGGCAAGGTCGCCTATTGTGGTGTTCATAACTTGTGCTGCACAATAAAGCTTATGCAAAAGGGCCAGTTCACGTCGAAACGTCTTCTCATGCAAGCATACCAAATCATTATCAGCACGTCCGTCTCAGCAATCCTGAGGTATGGTCCTATACAATCACGAGAATAAGGCTCTTGACAGATCTGTTCTTTTTGACCCCCAGTTCTTTATTTACATAATGTAAACACAAAAGCTGCAAGGCAGCTTGTTCATGTGAAGTATACagtcactttttgttttcttttttttctgtagggAGGAATCATACCATTACATAAAGTATATCATTAACAGTCAACACAATGGAACTATGAGACCCTACTCAGAGAGATTGTAACAGGCAGTTTGAACAAAGGGTTCTATTGACATTCCAGTGTATTTTCACAATGCATCTATCTATAGAACAGACGTTTCCAGGAACACGTGACCCAAGCCCCTCGCACTTGGACATTTGATGGCGCGGTCATGTTCATGGCTGAAAAGTATGCTCTGAGTAAAActattttggttttataaaGACTTAAATGAGCTTGTATCTGTAGGACTGTCTGAATAGTTTGGAATCTCTATGCATTAAActctatataatttatatatatttatttatctggtaAACAGAAGTAGATGTGTATCTATTCAAATGTACATGGGAATACAAATAGGAagatcagaagaaaataaatgggagaaaaaaaaaaaaaaacagtaccccccctaagaaaaacaaaaaaactttcattctgaatttaaaaatgtaaattaagtttTTAGCTAGTTACACAGTAATGCCATTTTTGGAGATGCCACTATCccttataaattaaaataaataaaacaaaaaaataattagctcTATGGAAGGTTTATACTGCACAGTTTCTGTAAGTGTGGATCGGTTCTGTACGCACTATAGTGGGTTTAAAAGTGTGTATAAAAGGAGGAGTCGTGCTATCTGGACCGGTCATGCCTGTCCCTTGCCATGTATACTGAGGAAAGGGGTCTTTCAAGACAGGTCTACAAAAAGCTGCATCGCAAGCTACAATTAGAAAAATggtgttgttttcttcccccaTGGAAATATTGGATTGGTCTTTTCTACACACTATTAAATCATAGGATTTCAATTGCATTTGCCCATCGCCAGCTTATTTCACATATATCTAACAGAGAAATTGGAGATCTACAAAATAAACCCCCCGCCCACCCTTGCCAGTTCTAAACCGGCCACCGATGGATCTAACCCACTGACATCTGCAAGGCACATACAGATACAATATATACTCATAGTGAGACTGAACCGCAAAGGGACTCCAACCGTTCCACGTATGATAGGGGTACCGGAGAGCGTACCAAAGGTTAATGAGAAAGCCATGGATTATGCAGCTGTAATAAATCAAGGCTGTATAGGTCGTTTGTATAATCAAGGTTTCCCCACCAAGTATTACTTCTCAGAAAGGAATCGTCACTTAGGTACCTCCAGAAACTTCTTTGCTCATCCTTAAACAGCTCTGTCGTTGTCGGGAGCTGTTGCGCTGCTGTTGCTGAAATCTACTCCTTACTGCAGACACAGGATTAACAGTTGACCTGAGGATCTGGGACTGGCAGTGTATGTAACTGGCAAGACAGTCACACGTTCCCTTATCCTTGCTTTAGATTGCAGAGTGCCTCATCCTCTCGGTTCGTTATGTGTATTGATTGCATTTTGCATTGCGGTCTCCTACACCCTGGAACCAGGCCTCCCGTTCCAAAGTATCTTTGGACAAGAGGCCCTCGATTCACAGAAGCAGAAAGAGAAGCATTCTCAAATTCTGAAAAAGAAATCAGTGACCTCGAGAGGAGACACTGAAACTGCAGTATCGGAAAGTCTGATTCAAAGTGGAAGTCATCTCCTCTGAATTGTGTAAGACTCATCAGTTTGATTGTACTTAAGTCAGTTCTTCTACTTGTTATGGAGCAACTGCTATTACGCCCTCAGTCATCGTTGTGTGATgagcagaggggtgggggggtggcgaGGTGAAGGGTGATTCTCAGGTTGTTAATACTGAAGTCAGAAAGCATTTGCATTCTCGGATTGGCATAACAAGAAACTTCGCTTTTAAAAGCCTTTCCTGAATTAGACATTGACACTGAATACATACAAGGATAAATGTTTGCAATGTAGTTAAATAAAGGTTAGGATACACTAACAGATGCACTGTCCTTGGATTTCTCTGCAGTGGAGTCCTTTTCAGTTGGTACAGCTGTAGTCTCCGTGGGCGGTGACTGAACGCTAGTGGGTGGTTCAGAGGTTTTGCTAACAATGTCTGTGTTGACTTCCGTCTCAGGTTCTTGCTGAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36196 lncRNA downstream 100167 43894179 ~ 43895951 (-) True G28907
TU36187 lncRNA downstream 102310 43863607 ~ 43893808 (-) True G28900
TU36079 lncRNA downstream 412705 43510760 ~ 43583413 (-) False AMCG00008144
TU35870 lncRNA downstream 897645 43097198 ~ 43098473 (-) False AMCG00008124
TU35727 lncRNA downstream 1401258 42522805 ~ 42594860 (-) True G28532
TU36272 lncRNA upstream 486344 44487210 ~ 44487419 (-) True G28973
TU36273 lncRNA upstream 665477 44666343 ~ 44666577 (-) True G28974
TU36277 lncRNA upstream 678950 44679816 ~ 44680042 (-) True G28977
TU36278 lncRNA upstream 680559 44681425 ~ 44681769 (-) True G28978
TU36275 lncRNA upstream 681571 44682437 ~ 44688175 (-) True G28976
AMCG00008151 mRNA downstream 23818 43962078 ~ 43972300 (-) True AMCG00008151
AMCG00008152 mRNA downstream 74090 43897216 ~ 43922028 (-) True AMCG00008152
AMCG00008148 mRNA downstream 319741 43666568 ~ 43676377 (-) True AMCG00008148
AMCG00008147 mRNA downstream 440085 43533559 ~ 43556033 (-) True AMCG00008147
AMCG00008144 mRNA downstream 466031 43512861 ~ 43530087 (-) True AMCG00008144
AMCG00008159 mRNA upstream 44067 44044933 ~ 44071985 (-) True AMCG00008159
AMCG00008158 mRNA upstream 72797 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008164 mRNA upstream 720873 44721739 ~ 44740915 (-) True AMCG00008164
AMCG00008165 mRNA upstream 748224 44749090 ~ 44752458 (-) True AMCG00008165
AMCG00008163 mRNA upstream 775787 44776653 ~ 44778533 (-) True AMCG00008163
TU35782 other downstream 1231464 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 2146228 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 2794293 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 2978870 41016159 ~ 41017248 (-) True G28202
TU34865 other downstream 4491526 39500321 ~ 39504592 (-) True G27861
TU36269 other upstream 417008 44417874 ~ 44418196 (-) True G28970
TU36715 other upstream 2049829 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 2480080 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 3713068 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 4123059 48123925 ~ 48124682 (-) True G29544

Expression Profile