RNA id: TU36275


Basic Information

Item Value
RNA id TU36275
length 1725
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G28976
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 44682437 ~ 44688175 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTAAAAGGAGGGgtactttatttattacacaGGGGAGCTGGTGTCACCTCACcagttcatattttaatttacacaataAACCAGCAAGgctgtttatgtatttggaaCCAAGATCGCAGTGGCACTATAAACACACGCTTAAAACAAGAAActctcttcccttttttttttttgttatacttttttttggTACAAAATGGtacaaacaacaatacaaaatagttgtgctGTTGACAGTTTACAAAAAAAGTCTTTAACTTGTTAACTGTgcaatgattgtgtttttttgttcatttttttgttttgtttgtcaatgTGAGTATGGTACACGCCAGAATTCGTTCTGGAAAAACAACCACAATCATGCGGGCtgctacacatttttttttgaaattttattataattatttttattatatcatAATGATCTTGTCCATTATAAAAAGACATGCAAAAAAAAGCTCcaattttacatgtatattttgccTAACTTGATCTGTTTAGCTTCAAGCAATTACTACATTATGTACACACTAAAGTGAGTAACATTAGGTGGTTAATTGTGTGTCTGTTGACTCCAATTAGACAATTTTTTGCCCCCCCTTTTCTCTATAGAACATGTTTGCCCTAATGATGACCTCATCCCTTTTGAAGTCTCTGCTTTAGTATTCTGCACAGTCCTAATGTGCATTTCCTTGTGTGTTTCAGGATTTACAGGCTGATGAAAAATAGCGTTGTCCTACTTTCAGGAGACAAACACTACAGAAAGGGGGGAGCTCCCAAGAAGCTTGTTTTCCAAATGATCGGTGGACTCGGTGATCACTGCGCTGCTGACCACCCAGGCAGACGTCAAGAGGAGATCTACTCTTCTAACGGCTAACGAAGACTGAAGTTGTGATTCCCTTAACCTCTGCCCACTTCACCAGAACTCCTCTCAATGGACACTAATCCACAGGGACCGAATCAAAGGAAGTTTTAGAGTCaccgacagagagagagcgagagagagagcgagagagggaaagagggaacGTGCCGCCCGATCCATTCGAATGGCAACCAATCCTGAGATAGTGGGAATCCGATAAAACGCACCAAAAAGGCACTTTTTAACAACAGTGCTTCTGTTCTAAGGAATTCAAGTTAAGAAAGAGTGCCTTTCACTCTCTTTAGTGATAAAGCAAAGGTTTTTcaagcaaaataaatcacacccCTGCTGGCTGCACTGGAACATAATAATGGTGCAAAGACTAGAagcatttctctttttgttttcatgctatTTAGACAGCTTATGTTCTAAAAGagtggaaataataataatcataaaaaaagtcattggaaaacaactgaaaacttgacactaaaaataaaagtattttttcttttcttgacaGTCAGCAGggggttttcattaaaaagcagCCTCTTTGTACAGTCCTCACTCTGCGTGGTGTCATCGTTGTTCCATTCTATTTCTGAAGTGGTGATGCATTGTGGGTATGCCTTGTGGCTGGGTTAGTCGTCATCGCCGCCCCCGTACATGTCGGCCAGTTTCTTGAAGCGAGGCCCCCAGTCGTTGAGATAGTCGTAGTCCTGGTCGCCGGTGCTGGAGGAGTTGAGGGAGCTGACTGAGCCAGCGGTGGAGCCGCTGCCCTCGTAGTCGAACACCAGCAGGGAGTCGTAGGGCGGGGCGGTGGGGTCGTTGTCCGCAGCTCGCAGG

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36278 lncRNA downstream 668 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 2395 44679816 ~ 44680042 (-) True G28977
TU36273 lncRNA downstream 15860 44666343 ~ 44666577 (-) True G28974
TU36272 lncRNA downstream 195018 44487210 ~ 44487419 (-) True G28973
TU36208 lncRNA downstream 681571 43996118 ~ 44000866 (-) True G28914
TU36401 lncRNA upstream 346270 45034445 ~ 45036413 (-) True G29081
TU36439 lncRNA upstream 461326 45149501 ~ 45151327 (-) False AMCG00008192
TU36509 lncRNA upstream 665632 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 731415 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 773604 45461779 ~ 45462530 (-) True G29192
AMCG00008158 mRNA downstream 599589 44073663 ~ 44082848 (-) True AMCG00008158
AMCG00008159 mRNA downstream 610452 44044933 ~ 44071985 (-) True AMCG00008159
AMCG00008151 mRNA downstream 710137 43962078 ~ 43972300 (-) True AMCG00008151
AMCG00008152 mRNA downstream 760409 43897216 ~ 43922028 (-) True AMCG00008152
AMCG00008148 mRNA downstream 1006060 43666568 ~ 43676377 (-) True AMCG00008148
AMCG00008164 mRNA upstream 33564 44721739 ~ 44740915 (-) True AMCG00008164
AMCG00008165 mRNA upstream 60915 44749090 ~ 44752458 (-) True AMCG00008165
AMCG00008163 mRNA upstream 88478 44776653 ~ 44778533 (-) True AMCG00008163
AMCG00008166 mRNA upstream 90561 44778736 ~ 44786186 (-) True AMCG00008166
AMCG00008174 mRNA upstream 107751 44795926 ~ 44814080 (-) True AMCG00008174
TU36269 other downstream 264241 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 1917783 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 2832547 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 3480612 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 3665189 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 1362520 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1792771 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 3025759 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 3435750 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3593167 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1590223 True 1713 lncRNA 0.41 2 NC_048580.1 57792798 ~ 57794571 (+)
eurasian perch (Perca fluviatilis) TU66810 True 1819 lncRNA 0.39 1 NC_053116.1 15637483 ~ 15639301 (+)