RNA id: TU36401


Basic Information

Item Value
RNA id TU36401
length 1922
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G29081
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45034445 ~ 45036413 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcctttttctttcaatatttacaatttattttttattatttaaattttatggCTTCATTGtacataaataacatgaaaatgCTCCAACACCTGCATGACAGACAACTGGCTGTGGAGTGAGAGGAGAAAcgacccaaaaaaaaaaaaaaaaaaaaatccttctgcAACTCATGCTTTTAATCGTGTCCTGCTGGTAAAATCAAACATCTCATTGTTCAAGCTTTCAAAGGAGTTTTGATCATTTCCCAGGATGgggatgaagaaaaaaagaaaaaaaaaaaaatcctgaacaAGAATGTAACGGTTTCTTTCCTTTAAATAGGTTAACATAAATACTGTAGATTTACCTTAAAGTTGCAGCAATATATTTAAGTGTAcatgagcatttttttttttttttttttttttttttttaaagcattgtcTGACATGATTATCTTATGATTAACagttatacaaaatacacaggTATTACAGTGTGAACTACCTTataaatatttagccaatactCCTtgtcccctccccccccaaTTGTATGATTGCATATTGAAATCAAATGCGAGCTACTTTGATCTACAATAACTTAACATAGAAAAAGTGAACATGAATGTGAAAGACAATGAAAGATAGTCCTACCTacatttcaggtttattttcctttaaaaaataataaagaatggCTTATGATAATcacagtgggggagggggggtatgAAAATGAGAATCTGGAAATAGTAGTTAAGGcctcatgaaataaaataagtattcctgcaggtttatttttgtttgacaaCTTTAATTTCTTCAAGAACATGTCAAGTCTAGAATTGTCCTCATCCTAGGATCTCTTCATAACAGAccagaaattacttttttgtccCTTTAGGGAGACTGTAACTTTTAAATTCCCCTCTAGGGTCTCCCACTCCTGAGAAAGGCCGACTCTTTAAGAGCCCAGCCCGCAGCGTCTGACGGAACCTGGGgaaatggggagaaaaaaaaaaaaaaaaacctccatcCCTTCACAGGTGAAAGGGTCTCGTTTTCCTCCTCTGCTCACAGGTATTGTTTATTGAGCCTCCAGTTCAGCCCTCCTACTCCTGCACTGAACCTAGTTGTGGAGCTTGACGTTGGCCATTCCTCCTCCGATCTTCAGTAACTTTGGATCCTCACAGCTCAGGTCAGGACTGCGTTTGGCAACAGACATGGGTCAGGTTTCCATTGtttgataaaaaataagtgtattAAAGAGTTTCTGGAAGCCCTTGATGCGGCCAGGTATCCTTCAGGCCCAGAACATCATCCTGGTGTCACGGGTTGTATCATGTCATAGTGCAATAAACAGTCACACTTCCTCCTctcctcctcctcctcctccttcgcTCCCCTTCCACTCTTACATACTTCATTCCCCAACCCACCAGACAGCTCTCACTGCATGCGGTCGGGGTGTACCTGCTGGGGGGGGTACTGGACAAAGGCAGCTGTGGGGGGCGCGGCTCCCGCAGAGAGGGACTGCTGGACTGTGGTGGGGGCGGCGGCCGGGTTAGTGGGATAGCTGTAACCCAGGAAGCCGGGCGAGGCGGCGTAGGGGTACTGCTCGAAGGCAGTGGAGGCATACTGGGCGTAGGCGGCGCTGTAGTCCAGGTAGGGAGAGTTCACGGAGGACATCTGGGTGGGGATCACCAGTCCTGGCTGCATGAAGGCCTGGGGGTACATGTACTGCTGGGCTAGCCTGGAAACAAAAAGACATGGGTTAGccaagagagaggggaagagttGTTGTGGCCAAGCATCAGTGGTTAAAAATCAAGGCCTGTAAAAATGATTGGAAAGAACCAGAACATCCAGTCTTAGTCCTGGGGCACCCAAAATGTAACGGCTTGCAAATCTAGTTTTTAACTGCAGTCTCTCATCGACC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36275 lncRNA downstream 346270 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 352676 44681425 ~ 44681769 (-) True G28978
TU36277 lncRNA downstream 354403 44679816 ~ 44680042 (-) True G28977
TU36273 lncRNA downstream 367868 44666343 ~ 44666577 (-) True G28974
TU36272 lncRNA downstream 547026 44487210 ~ 44487419 (-) True G28973
TU36439 lncRNA upstream 113088 45149501 ~ 45151327 (-) False AMCG00008192
TU36509 lncRNA upstream 317394 45353807 ~ 45354086 (-) True G29170
TU36523 lncRNA upstream 383177 45419590 ~ 45420462 (-) True G29182
TU36533 lncRNA upstream 425366 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 453594 45490007 ~ 45490890 (-) True G29206
AMCG00008180 mRNA downstream 36529 44997485 ~ 44997916 (-) True AMCG00008180
AMCG00008176 mRNA downstream 50700 44971340 ~ 44983745 (-) True AMCG00008176
AMCG00008175 mRNA downstream 71268 44951398 ~ 44963177 (-) True AMCG00008175
AMCG00008172 mRNA downstream 151233 44879010 ~ 44883212 (-) True AMCG00008172
AMCG00008173 mRNA downstream 162230 44852289 ~ 44872215 (-) True AMCG00008173
AMCG00008183 mRNA upstream 26368 45062781 ~ 45070971 (-) True AMCG00008183
AMCG00008182 mRNA upstream 50784 45087197 ~ 45092120 (-) True AMCG00008182
AMCG00008184 mRNA upstream 56371 45092784 ~ 45095951 (-) True AMCG00008184
AMCG00008192 mRNA upstream 114619 45151032 ~ 45228504 (-) True AMCG00008192
AMCG00008191 mRNA upstream 196976 45233389 ~ 45234479 (-) True AMCG00008191
TU36269 other downstream 616249 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2269791 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3184555 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 3832620 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4017197 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 1014282 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1444533 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2677521 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 3087512 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 3244929 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile