RNA id: TU36491



Basic Information


Item Value
RNA id TU36491
length 343
lncRNA type intronic
GC content 0.52
exon number 1
gene id G29153
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45378011 ~ 45378353 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gcagcgtcttgtggtcgcgttctttccgcagttttgcacagctctgcagaaatccactgaccccattggtggagcagcgcagatctgcgctacacaaacgtgacctgtacatgtgcacgtccgtgtttgttgaccttttcgCTGTGgggatcacgcgtgtttctgcgagatttggaggctgtgacgcagatccacGACAAGGATGTCAGATCCGTCGTGTAGTGGGTGCTCCCCTGTGCTTAAGCGATCGTGTAGTGTGTGCTCCTTCACgacacaaaagacacaaattcggtgcaaaatagtcgttaagtgtgagctgcgcactgttcacaaaatcgtgtcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36485 lncRNA upstream 23932 45353716 ~ 45354079 (+) True G29148
TU36298 lncRNA upstream 561348 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 579548 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 628103 44691541 ~ 44749908 (+) True G28956
TU36226 lncRNA upstream 1321403 44053965 ~ 44056608 (+) True G28931
TU36579 lncRNA downstream 161416 45539769 ~ 45542206 (+) True G29223
TU36682 lncRNA downstream 347630 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 509596 45887949 ~ 45888412 (+) True G29291
TU36736 lncRNA downstream 714555 46092908 ~ 46093489 (+) True G29320
TU36779 lncRNA downstream 890322 46268675 ~ 46268989 (+) True G29355
AMCG00008194 mRNA upstream 34146 45340574 ~ 45343865 (+) True AMCG00008194
AMCG00008193 mRNA upstream 41757 45328163 ~ 45336254 (+) True AMCG00008193
AMCG00008187 mRNA upstream 108179 45245953 ~ 45269832 (+) True AMCG00008187
AMCG00008186 mRNA upstream 135659 45239938 ~ 45242352 (+) True AMCG00008186
AMCG00008188 mRNA upstream 145310 45228642 ~ 45232701 (+) True AMCG00008188
AMCG00008200 mRNA downstream 22516 45400869 ~ 45408463 (+) True AMCG00008200
AMCG00008204 mRNA downstream 37924 45416277 ~ 45423427 (+) True AMCG00008204
AMCG00008205 mRNA downstream 65585 45443938 ~ 45468459 (+) True AMCG00008205
AMCG00008198 mRNA downstream 106277 45484630 ~ 45486967 (+) True AMCG00008198
AMCG00008210 mRNA downstream 110279 45488632 ~ 45488966 (+) True AMCG00008210
TU36476 other upstream 34097 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 206183 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 341595 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2076589 43292596 ~ 43301422 (+) False AMCG00008132
TU35886 other upstream 2228968 43146773 ~ 43149043 (+) False AMCG00008120
TU36524 other downstream 62160 45440513 ~ 45441064 (+) True G29183
TU36777 other downstream 889538 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2201860 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2216751 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 2248943 47627296 ~ 47671421 (+) False AMCG00008232

Expression Profile