RNA id: TU36523


Basic Information

Item Value
RNA id TU36523
length 873
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G29182
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45419590 ~ 45420462 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCAAACGTGTCTGCTGCATACTCTTAAACCTTAACTTCGATAGAGCAAGAGCAAAATGTATTGGTTAATCAAATGTTATTCGTTTGTAAAACGTTGCAGATCTCCAAGCTGGACTAATGTGTTTATGGTCAAATCAAATTGCATACTATTCAATAACTACAGTTGTAGAGGTTGGTTAATGGGTGATCCATAGGTCTCCTTGTGTTGTCCCCAGTCTGGCAGCTGACCTGTTATTCTGCGGAAACAGACCATGTCAGTATTCCTCCTGTACAGACACTCGTAGCATTGTGGGATAACAGGGTGGGGACTTGCTTGAGAAATTCAAAGCTGCAATGAGGTTACACTAGTCGAATTTCTAATAAACTATTcttccaataaaaataaaaatgttagttTCTCTAGATAGATTGTATATACATTCAGTAACATATTTGATGCAAGGAACTGTGAATATAACGCATGTACATGATggcaaaatgtgattattttgagTGCACCATTCTCAGGAGGCTTTGCTTAGGCCCACGTGTTGCAGGGAGTTACCTTGGTCTGTCCAGTCCCAGCCGCCCCCTGTATCGCTGCTTCCTCTCAATAGTGGTGAGAGCCTGTCTGTAGGTGTCTGCATACATGCCTGTCTGTCGTTTAGCAGTTTTCATAGTCGTCTCTGAGCTCTCTTTGCTGTGTAGAAATACAGGACATTGCTTTAAAAGTTAAACTGAAGACCAACATTTGATGGAACCAAATGAAATTACACCTCTCAGTTTAATTTAGTGCCATAATTCAAGAAGTGTACTTAAGGTTTTGGGAGCATTGATGGTAAAGGATCTCTTTGTTCTATTCTACTTTCtcagaataaaaaaactaaagcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36509 lncRNA downstream 65504 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 268263 45149501 ~ 45151327 (-) False AMCG00008192
TU36401 lncRNA downstream 383177 45034445 ~ 45036413 (-) True G29081
TU36275 lncRNA downstream 731415 44682437 ~ 44688175 (-) True G28976
TU36278 lncRNA downstream 737821 44681425 ~ 44681769 (-) True G28978
TU36533 lncRNA upstream 41317 45461779 ~ 45462530 (-) True G29192
TU36551 lncRNA upstream 69545 45490007 ~ 45490890 (-) True G29206
TU36650 lncRNA upstream 179097 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA upstream 248439 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA upstream 265776 45686238 ~ 45714037 (-) False G29249
AMCG00008202 mRNA downstream 4777 45409263 ~ 45414813 (-) True AMCG00008202
AMCG00008195 mRNA downstream 69503 45344179 ~ 45350087 (-) True AMCG00008195
AMCG00008197 mRNA downstream 79709 45337454 ~ 45339881 (-) True AMCG00008197
AMCG00008196 mRNA downstream 116624 45295300 ~ 45302966 (-) True AMCG00008196
AMCG00008189 mRNA downstream 139236 45272415 ~ 45280354 (-) True AMCG00008189
AMCG00008201 mRNA upstream 1303 45421765 ~ 45435361 (-) True AMCG00008201
AMCG00008203 mRNA upstream 46721 45467183 ~ 45484122 (-) True AMCG00008203
AMCG00008209 mRNA upstream 77644 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008206 mRNA upstream 83580 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008208 mRNA upstream 104765 45525227 ~ 45537055 (-) True AMCG00008208
TU36269 other downstream 1001394 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2654936 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3569700 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4217765 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4402342 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 630233 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 1060484 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 2293472 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2703463 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2860880 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile