RNA id: TU36579


Basic Information

Item Value
RNA id TU36579
length 1424
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G29223
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45539769 ~ 45542206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttatttttccttaagaACCTTTAATAACTGTACAGTAAAAAGTTCACATGCTTCTTTCAAGGTTTACACTTTGGCAATAAAAGTGCAGTTCACCAAGAAATCTTACACATTGAGGGAGAAGTCCTTATCAGTGGCCAATACTCAATTGCTGGTCTCAAGGATCCAAAGGTATTAAAATGGTGCACAATAAGTGGACTTTGATGTGGCAATAAGGCAGGGGATTAACAATGGTCAAAGTTTCTAAACACAAACGCACCAGGGTTAGatttgggatttaaaaaaaaaaaaaaaaaactggatccattaaattaaatgctgtaCATATCGGAACAGCCACCACCcatattatttttcctctgGAGAGACATCCAATGTTTAACAGACACCAGGGCGCAGTGAATGCACAGGCACACCTACTATTCTACTGGTACCATTTGACCATGAGGATGAGCCCTGTACTGGGCCAGGATGTCAGGAGTAGACCAAAAGTAAAATTTAGCTAAATTAAAGCAATAGCCAAGCTAGGCAGGCATATTGAAAAACTATTGGTGACACCGATGTCTCAAATTATAGAACAATTAGGAGTTCATCAGGTATGCACTTCTTGGCACCACCCACCCCACCTCCAGCTCACAACCTGGTCATCCAGTCCAAaccatatacaaaaaaaaaaaaaaaaaaaaaccaaattATGCTCTTTAGAAACTGCAGCTACTATACCAAGCACCTGGAGGGTGGTGGGGGATGGGACGGGGACGGGacgaaaacaaaaatacagagcaAATCTTGAGCACTCGGAGCTGCGTTTGATCAAtgtaaatgaattacaaaaatCATCCCCTACTTAAATGGAATAAACCCCTAAAACAAAGAGGCACAGACAGTCCCGCTGGCTGTTAATCCCTTGATGCAGACCTGGAGCGGGAGCGAGATTTAGAGCGAGAGGGGGAGCGCGAGGCCGAGCGCTTGGACGGAGATTTTGAGTGCCGGCTCTctgcagggggagagggggagcgGGAGACAGATTTGGGCCTCTCGCCCTTCCCGTTCTCTACGGGGGAGGCCGATCGGCTGCGCGACTTCTTGCTCCCGCCTTTTTCCTTGGAGTGGCTGCGGGAATCGCGGTCAGACTTGGCTTTGGAGCGACTCTTGGAGCGGGACTTCCTGGTGTCGGACCTAGACCGAGACTTTCTGCTGGCGGAGCGGCTGCGGGACTTCCGGGTGCGAGACCTGGAACGAGACTTCCTGGTGCGGGATCGAGAGCGGGACTTGCGGACAGGGGACTTGGAGCGGGACTTGCGCCCGGACCTTGAGCGGGATTTGCGTGCAGACCTGGAGCGGGAACGGCGCTTGCTTCTGGAACGAGATCTGCAGAATGAGATTGCAAATGTTATTCCAAATAAGAGCAGCACAATCTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36491 lncRNA upstream 161416 45378011 ~ 45378353 (+) True G29153
TU36485 lncRNA upstream 185690 45353716 ~ 45354079 (+) True G29148
TU36298 lncRNA upstream 723106 44768677 ~ 44816663 (+) True G28991
TU36303 lncRNA upstream 741306 44795924 ~ 44798463 (+) True G28995
TU36252 lncRNA upstream 789861 44691541 ~ 44749908 (+) True G28956
TU36682 lncRNA downstream 183777 45725983 ~ 45734261 (+) True G29271
TU36703 lncRNA downstream 345743 45887949 ~ 45888412 (+) True G29291
TU36736 lncRNA downstream 550702 46092908 ~ 46093489 (+) True G29320
TU36779 lncRNA downstream 726469 46268675 ~ 46268989 (+) True G29355
TU36782 lncRNA downstream 936286 46478492 ~ 46478774 (+) True G29358
AMCG00008210 mRNA upstream 50803 45488632 ~ 45488966 (+) True AMCG00008210
AMCG00008198 mRNA upstream 52802 45484630 ~ 45486967 (+) True AMCG00008198
AMCG00008205 mRNA upstream 71310 45443938 ~ 45468459 (+) True AMCG00008205
AMCG00008204 mRNA upstream 116342 45416277 ~ 45423427 (+) True AMCG00008204
AMCG00008200 mRNA upstream 131306 45400869 ~ 45408463 (+) True AMCG00008200
AMCG00008211 mRNA downstream 56994 45599200 ~ 45638789 (+) True AMCG00008211
AMCG00008212 mRNA downstream 166362 45708568 ~ 45714043 (+) True AMCG00008212
AMCG00008218 mRNA downstream 325137 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008219 mRNA downstream 497742 46039948 ~ 46068818 (+) True AMCG00008219
AMCG00008220 mRNA downstream 535101 46077307 ~ 46090993 (+) True AMCG00008220
TU36524 other upstream 98705 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 195855 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 367941 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 503353 45023148 ~ 45036416 (+) True AMCG00008177
TU35919 other upstream 2238347 43292596 ~ 43301422 (+) False AMCG00008132
TU36777 other downstream 725685 46267891 ~ 46268327 (+) True G29353
TU36848 other downstream 2038007 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 2052898 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 2085090 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 2089984 47632190 ~ 47637376 (+) True AMCG00008232

Expression Profile