RNA id: TU36650


Basic Information

Item Value
RNA id TU36650
length 1000
lncRNA type read_through
GC content 0.42
exon number 3
gene id G29249
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45599559 ~ 45714037 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAATAGTTAGGAAAActttatttctttccatttaCAGATAATGAACGTTACACTAGACTGGAGGCTACAATTCTGCAGTACATGAGGCAGCTTCACTGTCCAAATCAGATTCATTCTTTCTGAAACTCTTTGGtccagaaaaatacaaattaaagcagTGACCGACCTCAACTCCCTATACATATGGTGTTTGTTATTAAAGACTTCTTGTGTCATCAATAATGCTTTCTCATTGGTATTAAATGAGAGCTGGCATGTTTACAGTAGGCTTCAGGCCAGAAAGGGTTTtggtaacttttttttgtttcgtttttttgcCACAATTCATAATCTGTCCATGCTGGTTTTGAAGGCGTCTTCCAGTTCCTAATGACTCTTTGCACAGCCCCACCTATGCTTGATTTCCTCTCCCTTTCAAATTAGTTATGCCCACAATCCTTTGTCTTACCGTGACCAAATAAAAGTTCAGTAATTTCACAAATTCgatcaatgcattttcaaactgaaccatttttatatattattatttttatttcttggcagacgcccttatccagggcgacttacaatataaacaaacatttggtCTAGCTTCGCCAGCCTCCAAAAGGATCTCGTGAACTATGAAACGGCAGTGTGTCTGAGAGTGAGTGGGTGATGCGTTTCCACAGAGGAAGGAAGCTGCACAGACCAAGAGCTGGGTGAAGCAGGGTGGCCTTCCGCGGTAGCTGCTGGACAGGGAGAGGTTCCTAAAACAAAGTGCTTTCTATCTGACCACAGGTGGGctattacagtgcagtgtagcacACTTACAGGCAGGGATGTGAAACAGCCTGTAGGGAATCTGACAGGCAAGTTGGTTCTGATTTTAGAGGATATGAAAGGTGGTTTTGACCGCAAGATCAAAGTAGCCCATAGTTTTGAAAGGAGGCTctgggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTGGACTAAAGCA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36551 lncRNA downstream 108669 45490007 ~ 45490890 (-) True G29206
TU36533 lncRNA downstream 137029 45461779 ~ 45462530 (-) True G29192
TU36523 lncRNA downstream 179097 45419590 ~ 45420462 (-) True G29182
TU36509 lncRNA downstream 245473 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 448232 45149501 ~ 45151327 (-) False AMCG00008192
TU36696 lncRNA upstream 79641 45793678 ~ 45793951 (-) True G29284
TU36706 lncRNA upstream 265223 45979260 ~ 45979468 (-) True G29294
TU36772 lncRNA upstream 536626 46250663 ~ 46251181 (-) True G29348
TU36778 lncRNA upstream 553856 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 942197 46656234 ~ 46656566 (-) True G29375
AMCG00008207 mRNA downstream 52871 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008208 mRNA downstream 62504 45525227 ~ 45537055 (-) True AMCG00008208
AMCG00008206 mRNA downstream 80849 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008209 mRNA downstream 95997 45498106 ~ 45503562 (-) True AMCG00008209
AMCG00008203 mRNA downstream 115437 45467183 ~ 45484122 (-) True AMCG00008203
AMCG00008213 mRNA upstream 3355 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008214 mRNA upstream 23451 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008216 mRNA upstream 63425 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008222 mRNA upstream 397899 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008223 mRNA upstream 423711 46137748 ~ 46150163 (-) True AMCG00008223
TU36269 other downstream 1181363 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2834905 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3749669 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4397734 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4582311 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 336658 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 766909 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1999897 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2409888 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2567305 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile