RNA id: TU36654


Basic Information

Item Value
RNA id TU36654
length 986
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G29249
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 45599559 ~ 45714037 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAATAGTTAGGAAAActttatttctttccatttaCAGATAATGAACGTTACACTAGACTGGAGGCTACAATTCTGCAGTACATGAGGCAGCTTCACTGTCCAAATCAGATTCATTCTTTCTGAAACTCTTTGGtccagaaaaatacaaattaaagcagTGACCGACCTCAACTCCCTATACATATGGTGTTTGTTATTAAAGACTTCTTGTGTCATCAATAATGCTTTCTCATTGGTATTAAATGAGAGCTGGCATGTTTACAGTAGGCTTCAGGCCAGAAAGGGTTTtggtaacttttttttgtttcgtttttttgcCACAATTCATAATCTGTCCATGCTGGTTTTGAAGGCGTCTTCCAGTTCCTAATGACTCTTTGCACAGCCCCACCTATGCTTGATTTCCTCTCCCTTTCAAATTAGTTATGCCCACAATCCTTTGTCTTACCGTGACCAAATAAAAGTTCAGTAATTTCACAAATTCgatcaatgcattttcaaactgaaccatttttatatattattatttttatttcttggcagacgcccttatccagggcgacttacaatataaacaaacatttggtCTAGCTTCGCCAGCCTCCAAAAGGATCTCGTGAACTATGAAACGGCAGTGTGTCTGAGAGTGAGTGGGTGATGCGTTTCCACAGAGGAAGGAAGCTGCACAGACCAAGAGCTGGGTGAAGCAGGGTGGCCTTCCGCGGTAGCTGCTGGACAGGGAGAGGTTCCTAAAACAAAGTGCTTTCTATCTGACCACAGGTGGGctattacagtgcagtgtagcacACTTACAGGCAGGGATGTGAAACAGCCTGTAGGGAATCTGACAGGCAAGTTGGTTCTGATTTTAGAGGATATGAAAGGTGGTTTTGACCGCAAGATCAAAGTAGCCCATAGTTTTGAAAGGAGGCTctgggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36551 lncRNA downstream 195348 45490007 ~ 45490890 (-) True G29206
TU36533 lncRNA downstream 223708 45461779 ~ 45462530 (-) True G29192
TU36523 lncRNA downstream 265776 45419590 ~ 45420462 (-) True G29182
TU36509 lncRNA downstream 332152 45353807 ~ 45354086 (-) True G29170
TU36439 lncRNA downstream 534911 45149501 ~ 45151327 (-) False AMCG00008192
TU36696 lncRNA upstream 79641 45793678 ~ 45793951 (-) True G29284
TU36706 lncRNA upstream 265223 45979260 ~ 45979468 (-) True G29294
TU36772 lncRNA upstream 536626 46250663 ~ 46251181 (-) True G29348
TU36778 lncRNA upstream 553856 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 942197 46656234 ~ 46656566 (-) True G29375
AMCG00008215 mRNA downstream 23891 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008217 mRNA downstream 44435 45640286 ~ 45641803 (-) True AMCG00008217
AMCG00008207 mRNA downstream 139550 45539757 ~ 45546688 (-) True AMCG00008207
AMCG00008208 mRNA downstream 149183 45525227 ~ 45537055 (-) True AMCG00008208
AMCG00008206 mRNA downstream 167528 45504042 ~ 45518710 (-) True AMCG00008206
AMCG00008213 mRNA upstream 3355 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008214 mRNA upstream 23451 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008216 mRNA upstream 63425 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008222 mRNA upstream 397899 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008223 mRNA upstream 423711 46137748 ~ 46150163 (-) True AMCG00008223
TU36269 other downstream 1268042 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 2921584 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 3836348 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4484413 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 4668990 41016159 ~ 41017248 (-) True G28202
TU36715 other upstream 336658 46050695 ~ 46054346 (-) True G29301
TU36785 other upstream 766909 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1999897 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2409888 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2567305 48281342 ~ 48283213 (-) False AMCG00008256

Expression Profile