RNA id: TU36715


Basic Information

Item Value
RNA id TU36715
length 1514
RNA type TUCP
GC content 0.57
exon number 2
gene id G29301
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46050695 ~ 46054346 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTAAACATGCAATGCCCAAATGCAGAAGATGACCGCCGGGTTCCTGTGCTGAGCCAGGCCCCGGTCCACAAGAGCGGGATGCTGGCTGGGTTGCGGTCCTCTCTGCATTAGAGGGCAATGCTTTCTCAGGGCCGTTTGTCTGTTGGGTGGGAGCCTCCGTTTCAGCTCTGCATACCTGGCTAACATCtttttttaatggatttcCATCTGTCCACCTTTGGGGATACCAGTCCGAATACTGTTGTCTTCTTACAGTGTACAACATGGATGGTAGGAATCATTTCTGTACAAACGTCACTGCTCACAATGTCTGCTGTGCTTTGCCCCAAAGAACATTTTCTAGGGGATTCTGAAACAAGGGatggggaaggggaaggggaagaaGGTATCCCCtcattcttgtttgtttgtttcacagagTCTTCCCCAGTACAACAGGGCTTACCTTTCACCTTGCCTGACTCCCTGCATGAAACGGGAGAATCGTTGCTGACAACCTGACACTGAGGTTCTGTTTGGTAGGCCTGGCCAGATTCTGTACTGTCATAGACGGAGCCTGACCCTCTCCTGGCAGGGGCCGACTCCTCCGAAATGGGTGCCATGTCCCCTCTTTCAAAGTTTACGGGATTCTGGAGGGCTGCCATGTAGGACTCCCGATACCTGCACCGTAGCTCCTGGAGTTTGGACTCATGCCCCAGCTTCCTCCTCAGACACGGGGTGCAGGGCTCCTCGGAGAACTGGGCAGTCCGACCACAGGGCGTGGGGTCCCCGCTGGCTGGGGGCAGAGGCCTGGATGCCTCAAAGGAAGGGGGGTCCTTTGTAGTCCGTGGAGGTAACCTGCTGAGGGCCAGAGCAGCCCTCTCCTTGGTGAACTCCACCAGGTCCACATAATCCCCTTCCAGCTCTCGGTTGCGGCTGTCCCAGGTGTTGGGTGACACCCAGCCAATGGGTTTGCCAGCCACCTTGGGCTGGTCCACCTTGATAAGCCTGGTGCAGGTGCCATCGACGAGCCTGAGGGAGACTGCAATGCCGTCCTTGGCGGGGAGAATCCTGGTCTCCACGGAGAAGGGAGATGGGTTAGAGGAAGGGGGCGGCGCAGTTGGGGGAACCTCAGGGGTTACCAGAGAGCTGGCCATGGCTTTAGGTTTGTCCACAAACTCTGGACTGGCCACTTGTGCCCACGGTACCTTCACGATGCCCTGATCCGTGGACAGCAGGCATGTGTGCAGCGGGGTGCCATGGCGTCCCTGGTTGATCTCCTCCAGCCAGTCTTTGGTGAATATGCTGGGGTAAGAGGTCTCGGGGACAGGGGTCTCCTCCACCTCCCGGTGATCCTCCAGCAGGCTCTTGAGCACGATACGGGCTGCCTGTTCCCCAAAGGGCTGCACCTGCAGGTAGAAATCTCCTGGGCGCAAAAGCAAGGGGTTGAGGGACGCCAGCTGGATcaccaccctctctctcaggcagaGTGGCCAACCCTCAAAGCGGAAGAGCACGTCAGAGTACACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36706 lncRNA downstream 71227 45979260 ~ 45979468 (-) True G29294
TU36696 lncRNA downstream 256744 45793678 ~ 45793951 (-) True G29284
TU36650 lncRNA downstream 336658 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA downstream 336658 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA downstream 336658 45686238 ~ 45714037 (-) False G29249
TU36772 lncRNA upstream 196317 46250663 ~ 46251181 (-) True G29348
TU36778 lncRNA upstream 213547 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 601888 46656234 ~ 46656566 (-) True G29375
TU36805 lncRNA upstream 669287 46723633 ~ 46723895 (-) True G29377
TU36809 lncRNA upstream 849446 46903792 ~ 46904222 (-) True G29381
AMCG00008216 mRNA downstream 263714 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008214 mRNA downstream 289913 45737488 ~ 45760782 (-) True AMCG00008214
AMCG00008213 mRNA downstream 326268 45717392 ~ 45724427 (-) True AMCG00008213
AMCG00008215 mRNA downstream 388348 45645248 ~ 45662347 (-) True AMCG00008215
AMCG00008217 mRNA downstream 408892 45640286 ~ 45641803 (-) True AMCG00008217
AMCG00008222 mRNA upstream 57590 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008223 mRNA upstream 83402 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008224 mRNA upstream 146446 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008225 mRNA upstream 180657 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008228 mRNA upstream 692847 46747193 ~ 46747558 (-) True AMCG00008228
TU36269 other downstream 1632499 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 3286041 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 4200805 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 4848870 41199489 ~ 41201825 (-) True AMCG00008069
TU35307 other downstream 5033447 41016159 ~ 41017248 (-) True G28202
TU36785 other upstream 426600 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1659588 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 2069579 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2226996 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 3741625 49795971 ~ 49900951 (-) True G29928

Expression Profile