RNA id: TU36772


Basic Information

Item Value
RNA id TU36772
length 519
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G29348
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46250663 ~ 46251181 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNccggttctggcaacagagctacaggttgagctgtggctgcgagttactggttcaggtgagagatagagagagactgactgtccgctgttccttatagtctgtcagatcaataggtgattggttcctgagttcttgagattggatttcggtttcagcccccagtgtcctattggaggggggcttgatttatgactgatgtcaatccatgccatattttggaaatgccggttggcccgggttcgtagctctatgtcgggatttcggctctcatccacttcaaagagtttttatcacctacaggcccctttctccagacatctcatagcagaattccaaactatttggcctcttcttggtgccatcctccccaaaactgtcactttgatgcaaatcagttccaagctgatgagctaagggaatctgataactttgggggggagaggttttctttagatcagtgcttcagctcagagcccaaatgctcttatccaaatacacccaacataatgctacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36706 lncRNA downstream 271195 45979260 ~ 45979468 (-) True G29294
TU36696 lncRNA downstream 456712 45793678 ~ 45793951 (-) True G29284
TU36650 lncRNA downstream 536626 45599559 ~ 45714037 (-) True G29249
TU36651 lncRNA downstream 536626 45668901 ~ 45714037 (-) False G29249
TU36654 lncRNA downstream 536626 45686238 ~ 45714037 (-) False G29249
TU36778 lncRNA upstream 16712 46267893 ~ 46268278 (-) True G29354
TU36803 lncRNA upstream 405053 46656234 ~ 46656566 (-) True G29375
TU36805 lncRNA upstream 472452 46723633 ~ 46723895 (-) True G29377
TU36809 lncRNA upstream 652611 46903792 ~ 46904222 (-) True G29381
TU36811 lncRNA upstream 680178 46931359 ~ 46934268 (-) True G29383
AMCG00008225 mRNA downstream 12134 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008224 mRNA downstream 15676 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008223 mRNA downstream 100500 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008222 mRNA downstream 126896 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008216 mRNA downstream 463682 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008228 mRNA upstream 496012 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008229 mRNA upstream 706684 46957865 ~ 46964572 (-) True AMCG00008229
AMCG00008230 mRNA upstream 730155 46981336 ~ 47013277 (-) True AMCG00008230
AMCG00008227 mRNA upstream 795541 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008231 mRNA upstream 841110 47092291 ~ 47117500 (-) True AMCG00008231
TU36715 other downstream 196317 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 1832467 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 3486009 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 4400773 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 5048838 41199489 ~ 41201825 (-) True AMCG00008069
TU36785 other upstream 229765 46480946 ~ 46481898 (-) True G29361
TU36922 other upstream 1462753 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 1872744 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 2030161 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 3544790 49795971 ~ 49900951 (-) True G29928

Expression Profile