RNA id: TU36785


Basic Information

Item Value
RNA id TU36785
length 439
RNA type TUCP
GC content 0.58
exon number 3
gene id G29361
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46480946 ~ 46481898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGAGAGACGCCAAAAAGGCGGTTAAGTTCTTGCGAATGGCTGCAAAGAGTGGGGACTCCCACAGTCAGTTCAATCTGGGGCAGTGCTATGAGACGGGCTTCAGGGCAGTGCTACATCACTGCCGTGGATCATTACCAGCAAGCGGCCGCGGGGGGAGCAGGCAGGCGTGCCACATCCTTACAGCCATCTATggtcagggagagagagGGAGCGGCCTTTCAGAGGACGTCCTTCTCCGATCCATCAGTTCGTCTCCCTGCTTCTCCACAGCAGGCGGTTTCTGCCACGGGTCCAAATGTCCTGTGAGGATCGAAGATCTCGCAGGTCCACGGTGCCTCACCCCAACTCTTCCCCATTCATGGAGCACTGGCAGCATCCCCACATGCCCAGTCATGTATTCTGGCTCAGACCTCTCTGCCGAGCTCTCTGAAGCCTG

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36778 lncRNA downstream 212668 46267893 ~ 46268278 (-) True G29354
TU36772 lncRNA downstream 229765 46250663 ~ 46251181 (-) True G29348
TU36706 lncRNA downstream 501478 45979260 ~ 45979468 (-) True G29294
TU36696 lncRNA downstream 686995 45793678 ~ 45793951 (-) True G29284
TU36650 lncRNA downstream 766909 45599559 ~ 45714037 (-) True G29249
TU36803 lncRNA upstream 174336 46656234 ~ 46656566 (-) True G29375
TU36805 lncRNA upstream 241735 46723633 ~ 46723895 (-) True G29377
TU36809 lncRNA upstream 421894 46903792 ~ 46904222 (-) True G29381
TU36811 lncRNA upstream 449461 46931359 ~ 46934268 (-) True G29383
TU36825 lncRNA upstream 636739 47118637 ~ 47121378 (-) True G29397
AMCG00008225 mRNA downstream 242417 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008224 mRNA downstream 245959 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008223 mRNA downstream 330783 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008222 mRNA downstream 357179 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008216 mRNA downstream 693965 45777462 ~ 45786981 (-) True AMCG00008216
AMCG00008228 mRNA upstream 265295 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008229 mRNA upstream 475967 46957865 ~ 46964572 (-) True AMCG00008229
AMCG00008230 mRNA upstream 499438 46981336 ~ 47013277 (-) True AMCG00008230
AMCG00008227 mRNA upstream 564824 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008231 mRNA upstream 610393 47092291 ~ 47117500 (-) True AMCG00008231
TU36715 other downstream 426600 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 2062750 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 3716292 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 4631056 41846933 ~ 41849890 (-) True AMCG00008085
TU35381 other downstream 5279121 41199489 ~ 41201825 (-) True AMCG00008069
TU36922 other upstream 1232036 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 1642027 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 1799444 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 3314073 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 3571927 50053825 ~ 50054102 (-) True G29974

Expression Profile