RNA id: TU36811


Basic Information

Item Value
RNA id TU36811
length 334
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G29383
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 46931359 ~ 46934268 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCacttactattttgacagccggaagtcccgccctccctacgtaccatagaccggaaggcccacctcaccttccggttacccccacctttgaaccggaacttctctctccttcccatcACCCCCagggttaccctttgaccctcccttgtcagccatcttggatgatatcggccatattggatgtcagccatttgtaaggtcataggtcatctggtaagatggtagccattttgctagggtgacatccatcatggtgagggtccgagggtacctcaccctgctggtgtggaggtgtaatgtttaatagcataaactgtgtttttaaggttat

Function

GO:

id name namespace
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36809 lncRNA downstream 27137 46903792 ~ 46904222 (-) True G29381
TU36805 lncRNA downstream 207464 46723633 ~ 46723895 (-) True G29377
TU36803 lncRNA downstream 274793 46656234 ~ 46656566 (-) True G29375
TU36778 lncRNA downstream 663081 46267893 ~ 46268278 (-) True G29354
TU36772 lncRNA downstream 680178 46250663 ~ 46251181 (-) True G29348
TU36825 lncRNA upstream 184369 47118637 ~ 47121378 (-) True G29397
TU36832 lncRNA upstream 475519 47409787 ~ 47410050 (-) True G29403
TU36839 lncRNA upstream 596164 47530432 ~ 47530659 (-) True G29410
TU36859 lncRNA upstream 646020 47580288 ~ 47582074 (-) False AMCG00008233
TU36921 lncRNA upstream 732374 47666642 ~ 47918462 (-) False AMCG00008245
AMCG00008228 mRNA downstream 183801 46747193 ~ 46747558 (-) True AMCG00008228
AMCG00008225 mRNA downstream 692830 46235003 ~ 46238529 (-) True AMCG00008225
AMCG00008224 mRNA downstream 696372 46200792 ~ 46234987 (-) True AMCG00008224
AMCG00008223 mRNA downstream 781196 46137748 ~ 46150163 (-) True AMCG00008223
AMCG00008222 mRNA downstream 807592 46111936 ~ 46123767 (-) True AMCG00008222
AMCG00008229 mRNA upstream 23597 46957865 ~ 46964572 (-) True AMCG00008229
AMCG00008230 mRNA upstream 47068 46981336 ~ 47013277 (-) True AMCG00008230
AMCG00008227 mRNA upstream 112454 47046722 ~ 47068199 (-) True AMCG00008227
AMCG00008231 mRNA upstream 158023 47092291 ~ 47117500 (-) True AMCG00008231
AMCG00008233 mRNA upstream 645871 47580139 ~ 47607012 (-) True AMCG00008233
TU36785 other downstream 449461 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 877013 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 2513163 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 4166705 42761004 ~ 42764654 (-) True G28581
TU35536 other downstream 5081469 41846933 ~ 41849890 (-) True AMCG00008085
TU36922 other upstream 779666 47713934 ~ 47918462 (-) True AMCG00008245
TU36999 other upstream 1189657 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 1347074 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 2861703 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 3119557 50053825 ~ 50054102 (-) True G29974

Expression Profile