RNA id: TU36847


Basic Information

Item Value
RNA id TU36847
length 966
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G29417
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47577676 ~ 47578641 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtcgtcctcccaattttaggggctcaaaagtatttggacaaactaacataatacCAGACAATCAGTTTtgtcttcagcaagtgaaatgtatgctcaattggattcaggtcaggtgattgacttggccattgcagaacattccacttcttcaccttaaaaaaagtctatggttgctttcgcagtatgcttcgggtcattgtccatctgcttttgtcagcagtcacatcatcaataaatacaagggaaccagttcccttggcagccatacatgcccatgccataacatgcttcacagatgaggtggtatgcttcagatcttgagcagttccttcccttctccatactcttctcttcccatcattctggtcaTTGAtctttgttccagaactgtacagggttttttagatgttttttggcaaactctattGTGGTTTTCTGTTTccggtttacatcttgtggtaaacccactgtatttactctggtgaagtcttctcttgtttgttgactttgacacagatatgcctacctcctggagggtgttcttgatctggccaactgttgtgaaggggtttttcttcaccagggaaggaattcttctgtcatccaccacagttgttttccgtggtcttctgggcctcttggtgttcctgagctcaccagtgcgttctttctttttaagaatgtaccaaatagttgatttggccacacctgttgttttgctatctctctgattggtttgtttttgatttgcaaaactgaaggcaaaacaccccaagaacaagcaggaactaaagacggctgcagtacaggcctggcagagcatcaccagggaagaaacccagcatctggtgatgtctatgggttccagacttcaggcaggatttgcaaccaagtattgaaactcacaattttattcatgattatgttagtttgttcaaatacttttgaTCTCCTAatattgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36841 lncRNA upstream 12123 47565341 ~ 47565553 (+) True G29412
TU36833 lncRNA upstream 165110 47412359 ~ 47412566 (+) True G29404
TU36815 lncRNA upstream 538784 47038464 ~ 47038892 (+) True G29387
TU36804 lncRNA upstream 853781 46723633 ~ 46723895 (+) True G29376
TU36800 lncRNA upstream 1042492 46534967 ~ 46535184 (+) True G29372
TU36849 lncRNA downstream 10872 47589513 ~ 47589814 (+) True G29419
TU36852 lncRNA downstream 20593 47599234 ~ 47599468 (+) True G29422
TU36853 lncRNA downstream 22179 47600820 ~ 47601101 (+) True G29423
TU36854 lncRNA downstream 23577 47602218 ~ 47602686 (+) True G29424
TU36855 lncRNA downstream 26499 47605140 ~ 47606425 (+) True G29425
AMCG00008226 mRNA upstream 1046918 46530450 ~ 46530758 (+) True AMCG00008226
AMCG00008221 mRNA upstream 1446659 46124130 ~ 46131017 (+) True AMCG00008221
AMCG00008220 mRNA upstream 1486683 46077307 ~ 46090993 (+) True AMCG00008220
AMCG00008219 mRNA upstream 1508858 46039948 ~ 46068818 (+) True AMCG00008219
AMCG00008218 mRNA upstream 1666069 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008232 mRNA downstream 44311 47622952 ~ 47633651 (+) False AMCG00008232
AMCG00008238 mRNA downstream 135692 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008239 mRNA downstream 222457 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008242 mRNA downstream 311341 47889982 ~ 47892071 (+) True AMCG00008242
AMCG00008243 mRNA downstream 317277 47895918 ~ 47908312 (+) True AMCG00008243
TU36777 other upstream 1309349 46267891 ~ 46268327 (+) True G29353
TU36524 other upstream 2136612 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 2233762 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 2405848 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 2541260 45023148 ~ 45036416 (+) True AMCG00008177
TU36848 other downstream 1572 47580213 ~ 47586235 (+) True G29418
TU36851 other downstream 16463 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 48655 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 53549 47632190 ~ 47637376 (+) True AMCG00008232
TU36882 other downstream 85876 47664517 ~ 47715537 (+) False AMCG00008238

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU456511 True 15228 lncRNA 0.38 2 NC_047621.1 11219956 ~ 11276974 (-)