RNA id: TU36848


Basic Information

Item Value
RNA id TU36848
length 6023
RNA type TUCP
GC content 0.46
exon number 1
gene id G29418
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47580213 ~ 47586235 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGGGCTGCATAATTTCCTTTAATTGCCAATGCAGCAATAATAATAGagtaaatattttcatattcaaaatGTTCCCATGGTTaagacagtgaaaataaatcaggcTTGATTCTAGCCAGCAGTTACAGTCAATTTAATTAGCTAGGTGCTGACAGGCCCAGTTTCATGATGCATGGATTGGGTTCAGCTCATGGAAAGCAACTGCCAGCAACAAGAGAATCACAATCTTGGTTCCTTGCTGCATGTGAAAAGGGTATTGACAAAGTACAACCCCTGTGTTCAAGTGTTGAGCGGACAAGCCAAAACTAAAAATGGAAGAAAGGGAAAACTGTGCCTTAGACGTCTATTCACACCCTCTCCATCCTTGTCACAGCTGGTTAACTCTTTTCCAATCTTAAACAGTTTTCACACTAAAGCAAACTGTGGGAATGCACAGGATCTACAGTCTACTTCCAAGCAAATCCATGTGCAGGTGGGAGTGAAGCCAGAAACCACTCCATCCAAAGTGCAGCAGAAACTCAGACATTATGTTCTGCATATGGGTATACATTTGTTACAGGTTTAAAAGCTTGAAActtgaaaaacagattttctaACAGCTTGAAATGTGAAAGTGGCAAGTCTAGCAAAGactcattttcagtttcaatttcagTCTGTTTCAGCTAGTCTTCCACAGGAGTATAGCTCCCTTTCTGGTGTCTCAGTGCTTTTCTCTCGTAGCTGTAGAAACAGCTACCAACCATCCCAGGTTAACAcctaatgtattaatgtaagtggattatttgtatttaagagGCACAGTGTAGTTTCAAACGGTATAGTGATTCTAACTGTCAAGCAAACTGTTGGATAAGCTTCAGTTCATTTCCAGAATGTAATGTCAAAATGCAAAGGATTCAAATAGCATGTGCAGAAAACAATTTGGAAGCCACTGCAGTATGTGTCCCCCTTGACagactgaaaataattatacGCATTAAAATTATATGAGATTATAGGACCATTGAACATGCagtgcattcattaaaaaagctaaagtttttttttttgtaccagTCGCATAGGACTTAAGTCTCCTtgcaaaaacattgtgtgaTCGCACATCACaaaaaagcaatttgttttaaacaactgAACAAAGGCCCAGGTCTCCTGActgaaaaaagcaaataaatgagCTATGtcttaaaaaacatgtattaatgttAGTGCATAGAGTTTTACATTTCACCTTCAACCAATCACAGAGCTGTAAAGAAGTAGCTTTGTTTCCACTTGCATTTTACAGTTAGAAtacctttgtttttgtgtttatttaacatgttttatcaTTATCTCTCTCAGTCTTTGCTGCTTTCAGCACTGGCTATGCAACCAAACTATTCCAGCAAATCAACTACAGAATTAGTCACTGGTATCCTTCCCCttctttgtaattgttttctggagtagttaattaattataatttgcatGAGGTATAAGAGAGGAGAATCAAGCTTAAACAAGGTTCCATctaaatatactaaatatgtttaaaaaaaagtaacatttctgTGCATGTAAGCCTATTTAACTATCTTGTTGTTGATTATATAATATCTCCCCGATTTCtgaattcaataaaatacagtagaGTAAACTTGTAATTGCTTAAACTACCATGAAGTTGTTTAATCCTCATCAGACCAACCATTCATTGACAGACTGACTTGGTGTGCTATTTGCTACGCAGTACAGTGACTGATATagaagggggaggggaggcacTACTGTAGCTAACTGTATTCTGCCAATTCTCTTCATTGATTGGCCAATTAAACCCTGGCCAATCAATCAGCGAGCATCGATGGCCTCAAACAGGGGCGAGAAGGCTGTAGCACTTAGCTAGCAGCACAAATGGTAACATTGATTAAAGACAGCAGAGTTAAGCCAGGAAACAACTGTGTCAATTATAACAATTGTTGTAGAAAAGCAGCAATCATTCATAATCATCGGGCTGACCATAATGCATGCTGAGCCAACTGTGTTATATACTGATAAGATGGTCTTTTTCACAACAACTGGGTTTCGCTGACAGATATGAATGTCAGAGTTCTCTTTTGTCCTATTGAAGCACATGTTCTCTAACCCTGGACCTGGAGACCCCCTACTTCACTTCATATACAAGAGGGCACTGATCTCATGCACCCAAATGCAAGGGCAGCCATCACAAGCATTGCTCCTGATTTCATGAAAGCAAGTGTAAAGGCAGAAAgggtaaaatctaagcagagaCAGGCAGGAGCTAAATTTCAACTGTAATCAATCAGTTTCATTATTAGAAATATGGTCTCCATCTTATTTTACTGGATATTGTGTCATCTGTAAGTATTAAACCACCACTGTTGGCTAATGTTATTCTTCAAAACTTTGCCAGGATGTGAAAAGGTATAAAACCCCAGAATTAAGTGCTAGGACTTCTGGGGCAGGCTGAGACATTAACAAgccaaaaatgcattaaatccatgaagaatatttttatatataagtaaTAATCAGAATTAATGTATAAgaatattcatatacatattataacaTTAATCATAATGAAGCACAGAGATAAGGCTGCGGCCAAGACTGACAATTACTAAGAACTTCAGTTACATAATTCATATACTGTAAGGGGTTTCAATTAAAATCTACATTTCAATCCTAAAGGCTAAAATCcataattcagttttgtaatttattactTAATCTACGatatcaaataatacaaatcagcaGTGCACAGATGTGATCATAGATACATTTCAGTAGTTTTTCTAGGGCCATAAAAAGTTTGACCTAAGAACGAATCGCAATGTACAATCCTGTACCTCATTGCATCTTAATTTATAAGTAGTTGAAAGTGGTTTCAGACCATTTAAACTACAATAAAGTACAGGTTTAcctttttgcttttacttttgtGATTTGCAGGTAGTTCAAAGTTGACATTTTGACAAACCCTAGGTCTGTTGAACGTATCACTAACTTGGAAGACCAATGACTTAATTAAGTCCCTTGGCCCTTGagaactgcagctgtagatatCGATGCAGAAACCAATCATGTCTTTGATCTCAGTCAATGAGTGGTGTAGCATCTTATTGGTGGCATTAGTACATTTTATCACAAGATCCCTGAAGAGAAATCCATCacagaaacattacaaatgtcTGGCTGCAAAACTGAGACAGCATTTACAAACGTGAGTACAGAGCGGAGTATAATTAGTGCAATCAAGTCACTGCCTCATTTCTATCTACTTTTTATAGTCCTCCCTCATTATAGCACCAAGGACAGGACAGGCACTAAAAGTGGCAGTAAGCTGAGTTTGTATTATAAAGTGGAGATGTATTGAGAGAAACAAGCATACACTGAGACCAGATCACTCAAAAGAGGGAAAAGTGgtgattagatttttttctaaGGCTTAAGTAGTTGCTAACTATTCAAATAATTCCATGTAGGGCTGCAGCGTTCAAGGTTCATTCTTCtccaaggaaacaaaaataaaaaacctgagCAAATCCATTCCAAGTCCACTGCCTGCTCACAGCCTCAGTCTCTCCATGTCGTAGTTGAGCATGTTGGCGGCGTCAGACCAGGCAGCGTGGCGAGCCCCGTCCATCTCTGAAGCCAGCTGGTTGCCACTTGCCAAGGCGTGGTTGGCACCGCCGATGACAGCCTTGCACTCTGGGCATTTTTGCGTTTCCATGGCCCCCCCGCAGTCTCCAATGGCATAGACGTGGCCATTGGGGCACTTGTACCAGTGCCCTTGTGCCAGCCCCATGGCCTTGACGATCATCACCCTCTCTTTATCTGAGATGCCCAGCCCGCTGCGTGGCAAATAGGCGTTCAGATCCTCCATGGCCTTCTGTGCCCACTGCTCGTCCTTTTGTGTGAACGGTGTTGTGCCCTCCAGCCCCTCCCTGAGTGTTGCCACTTGCAAGTGAACGGTGGCCCCCAGCTCCCTGTTGCTTGCCTGCTTACAGCGTGCGTTCAACTCTGCCAGGTAGGTGAGCCTCTGGATCTCGCTCTGCAGGTCTGTCGCCTGCTGCTCAGAGAAGCTGAGGTCCGGGCACTTCAGCCACTCCATGCATTCGACAATGCGCTTGGAGAATTGCAGCAGATCCTCACTCAGCATGTCCTTCTCCGCCTTCTTCAACTTCCCCAAGCGCCCGTAGAAGGCAATCTTGTTCTCCAGTATCCCCAGTGCCCTCAATGACAGCCCACCCTCCCCTAGCTGCCCCTTGAGCTGCTTGTATTCCTCCGGGAGGTAGAGGTGGAAGGCCACCTGTTCCTTGAGGAGGCGCACGAGGGCCTTCTGCTTCTTCTCAATCTCCAAGGGTGAGCCGTGGAGCCGGGCTTTCACCTTCTCAATCTCGGCCAGGCTGCGGTTGATGGCTGCCCCATAGCGGAGGTTCCTACGGATGGGTGTGCGGCACTTGGGACACTCCTTAAGCTTGATGGCCATCAACTCTAGATCTGCCCCTGGCTCTTTGTCCATGCTCATGTAGTGGTCCATGCTACTGGTCTCCAGAAAGTGGCTGCAGTCCTCCAGCTGCACGAAATATGCCAATGGTTCATCCTCCATGCCAAAGAAAATTTCGGTCACCTCATCCTGATTGCAGACACGGCATTTGTCAGGGCAAGGATCCCCACAGAGCCCGATACAGGGATGCCCGCAGCCCAGGGCCTTTCCGCAGGGCTGGTTACAGGGTGGTCGATCGCAGGGTTCGTGGCACAGCTTAGTACAGCGGAAGTGAGGGCACTGCCAGGCACAGGGCTCCACACAGGGGGCACACGGCTGGCCACAGATCTTCTTGCAGGCACTGTGCACGCAGCGATTCTGGCAGGGCAGCTGGCATGGTGGGCACTCTTTGGTACAGGGTTCTCTGCACACGTGGGAGCAGACGAGCAGGCGGCCACAGGGGAGACTGCAGCCCTTATGAAAGCGGCCCTGGTGGCACCAGTGGCAGGTGCCTGGGCAAGGGTGGTCACATTTCAGTTTCTCACTGCATTTGACTCTACAAATAGCCCCCTGCCCTGTCATTTGTCTGGTATAGTGACAGGCATCCTCCTGCTGATGTCCACACTGTAGCTTCATAATCACTCTAACCTGGCAGCGGGGGGTACAAGCGTCACCACAGACTGAATCGCAAGGGTGCCCGCACCTCAGCTTCTTACTGCAGGGCTCCAGGCAGATGAAATCAAGTGGGTCTAGATAGCAAGGCACCTTCTGGTTGTGCCCACAGTAGGGGATCTGCTTCTCCACTCGAACTTTGCACTCATCACACTCCTGAAAGCAGAGCCCCGGACAGCGGTGGCCTAGCTCACATAGAACCTTCTGGCAGGGCTTGAGGCATTGGAACATCTTGTGATCGGCATCGTAGGGGTGGCAGGCGCGGGTGCAGACATGGCCGCACTCCAGACGGAACTCGCAGGGTCGGCTGCAGCCCCCTTCGGGCGCTTGGAGGAAGTCCTGGGCACTGGAGACCATGGCGCGAGTGCCAGGGTGATTCTGGCAGCACAGGATCAGTCCGCTGCCCACCTGCCCTCTCTCTCGCAAGGTGTGGAGGATGTTGCTCCACAGAGAGACCTTCCCGAACATGGCCATGTTGCCGATGCAGTAGAGGCCTTTCTTGGCGCGAGACAGGGCCACACAAACACGGTTGGCAATCTGCAGGAAACCCACACGCCCCTCCGGGTTGCTGCGCACCAGCGACAGCAGGACAATGTCATTCTCCTCACCCTGGTACTTGTCAACCACATGGACCTTCACCCCAGAAAACTGGTTGGCGGGCAGGAGCTTGCGCAGGCAGTGCAGTTGTCCGGTATAGGTGGTGAGGATGGTGATCTGAGAGGGCTGGTAGTCCTGACACATGAGGTAGCGGCACAGAGCCACCAGGAAGCAAGCCTCGTGCGGGTTCTGGTGACTGCGTCCATCCTGGATTTCCTGCTCAGGGAACTGGTGCTCCACAAAGAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36847 lncRNA upstream 1572 47577676 ~ 47578641 (+) True G29417
TU36841 lncRNA upstream 14660 47565341 ~ 47565553 (+) True G29412
TU36833 lncRNA upstream 167647 47412359 ~ 47412566 (+) True G29404
TU36815 lncRNA upstream 541321 47038464 ~ 47038892 (+) True G29387
TU36804 lncRNA upstream 856318 46723633 ~ 46723895 (+) True G29376
TU36849 lncRNA downstream 3278 47589513 ~ 47589814 (+) True G29419
TU36852 lncRNA downstream 12999 47599234 ~ 47599468 (+) True G29422
TU36853 lncRNA downstream 14585 47600820 ~ 47601101 (+) True G29423
TU36854 lncRNA downstream 15983 47602218 ~ 47602686 (+) True G29424
TU36855 lncRNA downstream 18905 47605140 ~ 47606425 (+) True G29425
AMCG00008226 mRNA upstream 1049455 46530450 ~ 46530758 (+) True AMCG00008226
AMCG00008221 mRNA upstream 1449196 46124130 ~ 46131017 (+) True AMCG00008221
AMCG00008220 mRNA upstream 1489220 46077307 ~ 46090993 (+) True AMCG00008220
AMCG00008219 mRNA upstream 1511395 46039948 ~ 46068818 (+) True AMCG00008219
AMCG00008218 mRNA upstream 1668606 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008232 mRNA downstream 36717 47622952 ~ 47633651 (+) False AMCG00008232
AMCG00008238 mRNA downstream 128098 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008239 mRNA downstream 214863 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008242 mRNA downstream 303747 47889982 ~ 47892071 (+) True AMCG00008242
AMCG00008243 mRNA downstream 309683 47895918 ~ 47908312 (+) True AMCG00008243
TU36777 other upstream 1311886 46267891 ~ 46268327 (+) True G29353
TU36524 other upstream 2139149 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 2236299 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 2408385 45149429 ~ 45171828 (+) True AMCG00008185
TU36366 other upstream 2543797 45023148 ~ 45036416 (+) True AMCG00008177
TU36851 other downstream 8869 47595104 ~ 47595686 (+) True G29421
TU36868 other downstream 41061 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 45955 47632190 ~ 47637376 (+) True AMCG00008232
TU36882 other downstream 78282 47664517 ~ 47715537 (+) False AMCG00008238
TU36905 other downstream 277334 47863569 ~ 47890683 (+) False AMCG00008242

Expression Profile