RNA id: TU36851



Basic Information


Item Value
RNA id TU36851
length 583
RNA type TUCP
GC content 0.44
exon number 1
gene id G29421
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 47595104 ~ 47595686 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTCTGCTGTTCCAAAGCAACAGTGACATTTTGTGTCCTTGGATATCCTGAAAAGctcttctaaataaataatattggtattttacattgctttgtTCCTTATTaatgtcaaataaacaaacaaataaatcacaatgctgTCAAACATTTAACAACTGTGAAAAGTGAATCAACCCTGATTTTCACCATGCACTACAGTAAACcctgcaaaatattttgttttatgagtgTACAGGGGTGGTATCGTGTGTTGCCTTCTACACCGTGCTTACAAACCTGTTCAGACAACCCTCAAATCGTGAGAAATGCAAGACTGAAGGACAGCAATAAAATGCTGGTGGTAAATCAGTACCTGCCAGCCATCCTGACTCTGTGTGGGTCCTCTCTCATCTGTTTTGTCCAAGCTCATTGCCAGCAGCAGTTCTGCCATCTCTTTGACTGCAGTGTCATCCTTCTTCTTCCGCAGGGCGTGGCCACGGAGCTCCCCCTCTTCTATTATCCTGTCTGCCTGAATCAGTTCAGCCTCCTCTTCCACCTCTACtagctcctcctcttcctgctcaggctcctcctcttcctcctct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU36849 lncRNA upstream 5290 47589513 ~ 47589814 (+) True G29419
TU36847 lncRNA upstream 16463 47577676 ~ 47578641 (+) True G29417
TU36841 lncRNA upstream 29551 47565341 ~ 47565553 (+) True G29412
TU36833 lncRNA upstream 182538 47412359 ~ 47412566 (+) True G29404
TU36815 lncRNA upstream 556212 47038464 ~ 47038892 (+) True G29387
TU36852 lncRNA downstream 3548 47599234 ~ 47599468 (+) True G29422
TU36853 lncRNA downstream 5134 47600820 ~ 47601101 (+) True G29423
TU36854 lncRNA downstream 6532 47602218 ~ 47602686 (+) True G29424
TU36855 lncRNA downstream 9454 47605140 ~ 47606425 (+) True G29425
TU36861 lncRNA downstream 17815 47613501 ~ 47615931 (+) True G29431
AMCG00008226 mRNA upstream 1064346 46530450 ~ 46530758 (+) True AMCG00008226
AMCG00008221 mRNA upstream 1464087 46124130 ~ 46131017 (+) True AMCG00008221
AMCG00008220 mRNA upstream 1504111 46077307 ~ 46090993 (+) True AMCG00008220
AMCG00008219 mRNA upstream 1526286 46039948 ~ 46068818 (+) True AMCG00008219
AMCG00008218 mRNA upstream 1683497 45867343 ~ 45911607 (+) True AMCG00008218
AMCG00008232 mRNA downstream 27266 47622952 ~ 47633651 (+) False AMCG00008232
AMCG00008238 mRNA downstream 118647 47714333 ~ 47716582 (+) True AMCG00008238
AMCG00008239 mRNA downstream 205412 47801098 ~ 47813090 (+) True AMCG00008239
AMCG00008242 mRNA downstream 294296 47889982 ~ 47892071 (+) True AMCG00008242
AMCG00008243 mRNA downstream 300232 47895918 ~ 47908312 (+) True AMCG00008243
TU36848 other upstream 8869 47580213 ~ 47586235 (+) True G29418
TU36777 other upstream 1326777 46267891 ~ 46268327 (+) True G29353
TU36524 other upstream 2154040 45440513 ~ 45441064 (+) True G29183
TU36476 other upstream 2251190 45340596 ~ 45343914 (+) False AMCG00008194
TU36420 other upstream 2423276 45149429 ~ 45171828 (+) True AMCG00008185
TU36868 other downstream 31610 47627296 ~ 47671421 (+) False AMCG00008232
TU36872 other downstream 36504 47632190 ~ 47637376 (+) True AMCG00008232
TU36882 other downstream 68831 47664517 ~ 47715537 (+) False AMCG00008238
TU36905 other downstream 267883 47863569 ~ 47890683 (+) False AMCG00008242
TU36904 other downstream 293341 47889027 ~ 47890683 (+) False AMCG00008242

Expression Profile