RNA id: TU36976


Basic Information

Item Value
RNA id TU36976
length 3136
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G29521
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48008657 ~ 48012955 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaaaaatatgttttattcaatttcttCATCAAATACACAGGTGGAGTGAACCCCAAATCTAATGCATTATCTAGACTTTgtgaacatttgtttattaGTATGCTATCTTATGAAAGGGatggtaaacaaacaaacacagaggtGAGAAAGAGTTCCCATGAACTGTGCATCACATCCCCATAGGCTGTTCCTGATTTTCCAAAAAACACTTCTCAGCTGAGATCAGAACTACATGCTTTCCAACCCAATGCATAGATCAcacttgtttgttgtttttcataatgtGCATGAAGCATTATATAACAAATAGGGCATGTCATACATTTTCCTGTGTTATAATTTCTTAagtgtcaaatacattgtttcataGAGTTGGTTCTTGAACATCAAAAGAGATAAATAGGGATCTGCAGAAACCAAGGACCTAAGCAGCAAcaggaggattttttttaaacctgaaatAACTAAATCTTGTATTGCAGGCATACAGGAATCTAATGAAGATGaattcttaaaacattttatggtCAAACTACACATAACAGTCAGGCACTACACTGCCATAACAGGTTAATTAGGCATCAATTCATTAATATAGTTCTGTGCATTACAACAATGtgtaaaaagtaaacaaatacatatttaatacaatgtgAAAAAACAGTTCCATGATGGACAGTTAGTTGTAACATATAATattacacacagaaaatatatttaaaataaaaaaactaactaaaaaGGTTTAAATAGGTATAATTCTTtggatttcatttaatttgaggCAATTAAGGTTAAATATACTACTAAgaccaatatatattattgtgctTCCATACAAAGTGTTTTCATCATTCGGTAGATTTAcagtacatacaaaatataataaatcaaaatacaataaaagtgaaacaatttaacattttcagtgctAAAAATGATATTCCTTAAGACTTTTGATGCTAGTTTAGTTACATACATTGTACCATTTCTCTTTCAATCACAGATGATGGTGGCAATGGTTTtcattacagtaataataataaaaataaaaataaatcttatttgCTGTGTGTGGAAAAATCTCAGATCAATCTGTCCCTGCACAGAAAGGTATACCACTATATATAGTTATGAAATTGGCATCATGCCTTAAAACATGTAAAGTGATTGGACTTATAGCATTAAAGCTGCCAGagttaaatagtttaaataaaagtagTTCACCTTGTTTAGGGATAATCAGGCATCTTAAGAGAGATAGCTGGTTGAGTCCTGTGaatagtttaaaatagtttacattTGGAGTGTAATTTGAACCCAGACAGCACTGACTCCAATCTAAACTATGTCCTGCCTTACTATGACCGGGATTCCCATTCCAAATTGGGAGGgtataagttaaataaatacagtttttttatgaaagaaagaaaagaatagAGGTGGTTTCTACAGTGGTCAGTGAACATTAATATTTGAGACTGGCCATAATACATGATACAAGGTACACCATTAAGTCTGATTCCCAATAAAGAAATGAAGGCTGGTTCTTTTACTAAATAAAGGAGCTTTGATGACTTGCCTTTTAAGCAGAGCCACTCATTATCATATTACTCTGTGAAATCTGTGTCCCATGCAGTCAGTTTCTTTGTCTTTGAGAGGCATTTTTCTGCAGAGCCAGTGAACTCTGATTCTGGGTTAGAACAGCCTAATCTTAGTGCTGCCTCTGCTCATATGAATGTACTTTCTTTTGAAGTTGTGTCAATGTCTAACTAACAGGGGTAGGACTGGTTCTGTTGTAAACGTGGAAATCAGCTCTTAGTTATATTATAGAGTGCTTATAAAGGCAGCATTATATGGCATTATCGCATGGCTTTgtgcattgcaaaatTGCAGTTTAAAGTGAGCTGcgattttaaaagaaatgatTAGGTAGTGGCTGCATCAAAGTTTTACAGTAATAGTCTGCtgaataacttatttttatacaataatCTGATTCCCAAAACTAGAACTGGAGAAGCTGCTTTAGATTACCATTTATATTGGTTCCTTCAGATATACTGTATCTAATGTAAATTTTCCCAAATAGTCAACATATTTAGCAACAAGTTAAGTTGTTTTGTGTCATAGatttaaatagaaatgaatGTAAGGTCTTGCAAGTATTTCTGTCTCTGGTGAATGGGCATATTGGCAAGGCGATGTAGTTAAGATAATGTCCTTGTTGGGAGAATACAAAGACTTCAGCTTTCTAAATAATCTAAATCttgtttaaattctgtttttttaagtactACAACATATCAGAAGAGGctaacattatttatatagagGAATAATAGAAAGATTTTAAcccaaaatgtacattattgtaaatgtgtgtaagGAAACAAGTCAggaaatatttttcttcaacTATGTATAGTATTAATTAATAAGGGTTTATTCTCAAATTCAAAATTGAATTGAAGTTTGCACAAGagtaaaaggtttaaaaaactGTCCTGTGAGCAGAGAACTATACAACTTTACTTTAGGCTTGGCTGCatcttttattaattgtatattgaCTTATTGAAGTGTATGGCTAGATGTTTCTCGGCAATAGCATTGAAAATGGCAGGGGTGTCCAGACGTGGAGGGCTacagtgtctgctgttttttttgttttaacaggaGCTCTCAATTGttcaattattgtaataattttgGTAGGCTAAATTAAGACTTTcactttttagttttacagCTGATAACTTAAAACATGTTGAATATCCAAAATATTGTACCCACAGCATATTTCTGGAGTCTGGGGAGAAGTgttcaattcatccagttaataattgaattagaccaattaaggagccaagagctgggctggaacaagaACCAGCAGACTGACACCATTGGGTTAAGGTATTGTACACCACATTGTACAGCTGTCAAAAGACTGCAATTTCAGTGTTCATTTGGTGTCAATATTTCTCTCTAGCTTCTTAAGCAAACCCACAATACTTCCCCAGAGGTGTGGTTTCTGATCTGGCAGTAGGGGGACAAGCTTCCATTGGGTGGTGCAGTCTGCGTAGTTTAAGGCCTGAAATCATAATATGATTcacctagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36921 lncRNA downstream 90195 47666642 ~ 47918462 (-) False AMCG00008245
TU36925 lncRNA downstream 90195 47666642 ~ 47918462 (-) False AMCG00008245
TU36924 lncRNA downstream 117974 47713934 ~ 47890683 (-) False AMCG00008245
TU36859 lncRNA downstream 426583 47580288 ~ 47582074 (-) False AMCG00008233
TU36839 lncRNA downstream 477998 47530432 ~ 47530659 (-) True G29410
TU36985 lncRNA upstream 14762 48027717 ~ 48030913 (-) True G29530
TU37044 lncRNA upstream 282098 48295053 ~ 48297299 (-) True G29583
TU37057 lncRNA upstream 319153 48332108 ~ 48332942 (-) True G29595
TU37077 lncRNA upstream 402048 48415003 ~ 48418903 (-) False AMCG00008255
TU37078 lncRNA upstream 402048 48415003 ~ 48418903 (-) False AMCG00008255
AMCG00008245 mRNA downstream 90545 47916071 ~ 47918112 (-) False AMCG00008245
AMCG00008244 mRNA downstream 121358 47882297 ~ 47887299 (-) True AMCG00008244
AMCG00008240 mRNA downstream 216136 47783301 ~ 47792521 (-) True AMCG00008240
AMCG00008237 mRNA downstream 266295 47717707 ~ 47742362 (-) True AMCG00008237
AMCG00008236 mRNA downstream 331907 47642979 ~ 47676750 (-) True AMCG00008236
AMCG00008254 mRNA upstream 29718 48042673 ~ 48202462 (-) True AMCG00008254
AMCG00008256 mRNA upstream 189666 48202621 ~ 48291443 (-) True AMCG00008256
AMCG00008255 mRNA upstream 398130 48411085 ~ 48418933 (-) False AMCG00008255
AMCG00008258 mRNA upstream 471440 48484395 ~ 48643942 (-) True AMCG00008258
AMCG00008257 mRNA upstream 661573 48674528 ~ 48697834 (-) True AMCG00008257
TU36922 other downstream 90195 47713934 ~ 47918462 (-) True AMCG00008245
TU36785 other downstream 1526759 46480946 ~ 46481898 (-) True G29361
TU36715 other downstream 1954311 46050695 ~ 46054346 (-) True G29301
TU36269 other downstream 3590461 44417874 ~ 44418196 (-) True G28970
TU35782 other downstream 5244003 42761004 ~ 42764654 (-) True G28581
TU36999 other upstream 110970 48123925 ~ 48124682 (-) True G29544
TU37036 other upstream 268387 48281342 ~ 48283213 (-) False AMCG00008256
TU37454 other upstream 1783016 49795971 ~ 49900951 (-) True G29928
TU37508 other upstream 2040870 50053825 ~ 50054102 (-) True G29974
TU37591 other upstream 2260783 50273738 ~ 50274183 (-) True G30054

Expression Profile